Cpyr009255.1
Basic Information
- Insect
- Cosmia pyralina
- Gene Symbol
- -
- Assembly
- GCA_946251865.1
- Location
- CAMIUE010000295.1:789487-822435[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.36 42 6.2 0.6 1 23 506 529 506 529 0.95 2 11 0.098 12 8.0 0.9 1 23 537 559 537 559 0.94 3 11 0.3 35 6.5 1.1 1 23 563 585 563 585 0.93 4 11 0.00068 0.08 14.8 0.9 1 20 592 611 592 613 0.94 5 11 0.0069 0.82 11.6 1.0 2 21 620 639 620 640 0.92 6 11 0.00023 0.028 16.2 0.6 2 23 656 677 655 677 0.94 7 11 0.0007 0.082 14.8 0.3 1 23 682 704 682 704 0.97 8 11 0.023 2.7 10.0 3.7 1 21 713 733 713 734 0.95 9 11 3.6e-05 0.0043 18.8 2.3 1 23 746 769 746 769 0.93 10 11 0.015 1.7 10.6 0.4 1 23 775 798 775 798 0.92 11 11 0.47 55 5.8 0.1 3 11 811 819 809 821 0.86
Sequence Information
- Coding Sequence
- ATGAAGGAAGTTAACATAAATATAGAAGGCTATAATGTTAACGGGATATGTGTCGGCTGTTTGAATTACAATCGTCGAATGTTTTATCACCCCAACGTAAAAGAATGTTTTCGTTTGCTCGGAAATATTGATGTAGCAGATGGCCTAGAAGTCCAAGTGTGTTGGGAATGTCTCGCGCGCATCAAATCAGCTATCAAGTTCAGGGAACAGATGCTAAAGTCTTACGACTTTCTTATCTCGTATTCTAAAGAGCACACGTTCCTGGACTCTCCGAATGACTTTGATCCTCACGCCACCACCAACCTAGAGAGAACGGATGTGCAGTATTACGAGTGTGTGCCAGAAACAGAAGTGCTGGATGGCAATGAGGTAGACGTTGGCGTTAAAGAGGAAGAGGAGGTTGAGGACAAGTATGGTTTCGAGGTGagaataaaagaagaaacattTGACGATCCATATTTCCAAGATGTGTCTACTGTAATTGATAATGACGTCACATCGGATGAAGATATGCAGCTTTCTAAACTTAAAGAGAAAGAGACGGAGAAAGGGAAGAAGAAGAGAAAGAGTGAGAAGAAGAAGGAAAGGGAGAGCGATAGGATGCCAGCCAACAAACGACCAAGAAAGACTACACGAGGTCTCTGTGAGATATCACAGTTTGAAGCTGCGTATGAGCAAATGGTCAATCACGGAGTGTCTCTACGACAAGCGAGCAAAATGTATAATATAACACACGTCACTCTACAACGATACAAGAAAAGACGTGAAACTACAAATCTTCCTGTCAAAATGGGCTATGCACGTAACAGTTTTTATACTACAGAACAAGAAATTCTCCTAACTAAATACTTGAAAAAATATGCGGACATATATCCCGGGTTGTGCGTGAAGGTAGTCAGGAAATATGCCACGGAATTCAGTCAGAAGCTCGGTTTGAAAACTCCGAAGCCTTGGGTTGATAATAAGATGGCTGGCATTGATTGGTACAAGAATTTTATCTATAGAAATAAAGctttggaaaataaaattgatcgAAAAACTACTAAAGAAaaagttagatttttttatgaTCGATTGTGGACTTTATTATGTCAGTATAACTTTGGATCCGAAAATATTTACTCTTTAGACGAAATTGGAGTTAATATTGAAGAGTTTAGAGATAAAATTTGGTTGATGACGACTAAAAATGGTCCTATAGCTTTGAAAGAGTCTAAAGTTATGTTCACTTACGCAGCCAACGCTAAAGGTTATGTAATACCCCCTTTATTCTTAATACCAGGAGAGGAAAAAGAAGAAACTCCAAAAAACAACTGTGAAGTCAAAATAGAAAAAGATTTGATGATGGAATCCCCAAAACGTCAGGAGACTAAGAAAGACAAACACCCCGACAAGAAAAGTAGGAAGCTAAAGAATCTTCCAGAAGATTTGGTAGAATTATATACTATGAGTACAGCAGACATGAAGGCTATTAGAATTGAGGATCTCAACAGCAAGGAGTTTCAGAAGCTTAAATATAGatgTGATGATTGCATCATTGCCTTCAATACTGAAAAGTTGATGCATGACCATCTAAATGGAAAACATCAACCTaaaagcGAGAACTGCCATCAATGCCCAATATGTCATGCCTATTTCCTAACTAAAGACAACGTGGCCGCACACAAGGCATTACATCAAATAGGCTATAAATGTCAGGAGTGTGGGTTCAATACTTCGCTGAAACGACGCATGTTGAAACATGTTGGGAGTCACGCTCCCAGTGGAGAGGCTCATGTGTGTCAGACTTGTGGGAGTAGTTTTAGCACAAAATCGAAGCTAACATACCACCGTGGCGTGTGTTGTCAAGAAAGGCCACAATGTGATTGCTGCGGAAAAGTATTCGCCAACAAAATGACACTCAAGTACCACCTCAAAATCCTGCCTCAGAATAAAGATGATAAACCGAAAGAGAAGTTGTTCATACCGTGCAAAGGATgtgataaagtttttcattcCAAGAAGAGTTACAGAGCGCATGTTGTAATCCACGATGGCCTAACCTACCCATGCCCAATCTGCGGCAAGCTGTTCCAATGGAAGCGCAACCTGGCGCGGCACTCGCGCAACCATCGCGACCGACAAGCGGGCAACTTGCACGAGTGCCGCGCTTGCAGCAAAACGTTCGCGAGCAGAGACTGCTACAACAACCACATGAGGTTCAGCAAGAAACACGTGTCGCAGGATACATTCCCACACGAATGTAACTATTGCGGAAAGAAATTTGCTACAAAATGGTGTCTTACCGACCATATTGACTGGGATCACTTGAAGAAAATCAAATACCAGTGTAGCTTCTGTTTTAAGGCATTTAAAACTGCTAAAATATTGGTAGCTCATGTCAGTAATATACATGaaggcaaaaaaaaagaagtggAGGGCGAACATCTGTGTGAAATATGCGGCAAATCGTACACGGTGAGTTAG
- Protein Sequence
- MKEVNINIEGYNVNGICVGCLNYNRRMFYHPNVKECFRLLGNIDVADGLEVQVCWECLARIKSAIKFREQMLKSYDFLISYSKEHTFLDSPNDFDPHATTNLERTDVQYYECVPETEVLDGNEVDVGVKEEEEVEDKYGFEVRIKEETFDDPYFQDVSTVIDNDVTSDEDMQLSKLKEKETEKGKKKRKSEKKKERESDRMPANKRPRKTTRGLCEISQFEAAYEQMVNHGVSLRQASKMYNITHVTLQRYKKRRETTNLPVKMGYARNSFYTTEQEILLTKYLKKYADIYPGLCVKVVRKYATEFSQKLGLKTPKPWVDNKMAGIDWYKNFIYRNKALENKIDRKTTKEKVRFFYDRLWTLLCQYNFGSENIYSLDEIGVNIEEFRDKIWLMTTKNGPIALKESKVMFTYAANAKGYVIPPLFLIPGEEKEETPKNNCEVKIEKDLMMESPKRQETKKDKHPDKKSRKLKNLPEDLVELYTMSTADMKAIRIEDLNSKEFQKLKYRCDDCIIAFNTEKLMHDHLNGKHQPKSENCHQCPICHAYFLTKDNVAAHKALHQIGYKCQECGFNTSLKRRMLKHVGSHAPSGEAHVCQTCGSSFSTKSKLTYHRGVCCQERPQCDCCGKVFANKMTLKYHLKILPQNKDDKPKEKLFIPCKGCDKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHSRNHRDRQAGNLHECRACSKTFASRDCYNNHMRFSKKHVSQDTFPHECNYCGKKFATKWCLTDHIDWDHLKKIKYQCSFCFKAFKTAKILVAHVSNIHEGKKKEVEGEHLCEICGKSYTVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00906676;
- 90% Identity
- iTF_00373941;
- 80% Identity
- iTF_00373941;