Cpyr010814.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cosmia pyralina
Gene Symbol
-
Assembly
GCA_946251865.1
Location
CAMIUE010000353.1:291908-293881[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.0099 1.2 11.1 0.4 2 23 209 231 208 231 0.94
2 9 0.00057 0.067 15.0 0.3 1 23 236 259 236 259 0.92
3 9 3.1e-05 0.0037 19.0 2.8 2 23 263 284 262 285 0.92
4 9 5.1e-05 0.006 18.3 0.3 2 20 289 307 288 309 0.94
5 9 1.4e-05 0.0016 20.1 3.1 1 23 325 348 325 348 0.96
6 9 0.044 5.2 9.1 0.8 1 23 354 376 354 376 0.91
7 9 4e-05 0.0047 18.7 0.4 1 23 382 404 382 404 0.98
8 9 3.4 4e+02 3.1 7.3 1 23 410 432 410 433 0.94
9 9 0.016 1.9 10.5 3.3 2 23 439 460 438 460 0.95

Sequence Information

Coding Sequence
ATGACGTCAATAAATAACGCTTTGAACAGCATTATAAATAGGAAGAAGGATTTTTGTTGTTTATGTTTGTGTTCATTAGACGAGGAACCGATTCGATTAAATGACGAAGTTGTAGTTAATATACATAGTTATGAATACGATACAgtcatttcagaagtgttgaaCTTTATCTTTGATCAAGAGATGTGTTCCTACATAAATACATTCAATGCATTATGTGATCAGTGCACGAAATCAGCAATAAATTGCTACAGGTTCAAGCACACATGCCTGAAGAACGCTGAATATCTTACTGATGTTCTTGATGGAGTCACAAACAACTTTGAATATGCTACAAATGAACTTTATGACTGTAAATCTCTGTATGTCTCACTTAATCTTCTAGACTTGACTAGCAAACAATTCTATGATACAAAGAAGAGTGTCAATACCCCACGAGCTGCATTGCGTAGATTCCGCACACTAGATAATACCAATAAAATTAAGGTTGAAGATATGATCCTAAAAAAGATCAAAAAAGAAGAATACAATGAAAATGGTAAAGTGAAAAACAGGAAAACTAGAAATACAACTGACATTCCAACCTGTGAAATGTTGTATGATAAGAACAATCGTGATTCGTTAAAATGTAGAGAATGTTACAAAGAATATCCAACTATTTGGAACTTGAGGAATCATTTTATAAGAGTACATGCTCCTAAGGTCTTTAAATGTTCTGAATGCCCTAGAAGTTATGGATCTGCATCATTTCTGGAAGCTCATAAATCAGACAGTCATTGCACAATAGTCTGCAGTGAATGTGGGAAAACTTTCAACAATAAGCATACCCTAAAAATGCATGAGTTGGGCCATCACTTGAGCTTGGTTTGCCAAGACTGTGGCAGagtgtacaaaaataaaactacattcaaaAAGCATATTGATCTAAATGTTTGTGGAAAGGAAACGAGGGCTAATCCAGCAGAAGCTACATTCACTTGTGATTATTGCAACAAGAAATACACACAGAAAGTATCTTTAAGAGTTCATATTCAGCATGAACATGGAAATTATAAGTCCCATGTCTGTGAATGGTGTGGGAAGAAATTTTGGGCACAAAGTCGATTAAAAGCTCACTCTGTAAAACACACAAAAGAGAGAAACTTCCCTTGTTCAATATGTGGAGGAAAATTTGTTACTAGAGAGTCCCTCTTATACCATACAAGAACCCATACTGGTGAGAAACCTTACAAGTGCCCACATTGCGAGTGCAGATTCCTTTCTGCTTCCCGTAGAACAGATCACGTGAAACGGCACCACATAGGAGCCACACTAGAATGTGACATATGCCACAGCAAGTTCAATTCAAAAACTTTCCTATTAAAGCATAAAAAGGCTCACACAAAATCAGAGAGCAAAGGCAATTTAACTTACGAAGATGTAAAAACTATGATGCAACCAAATCATAAACACCAAAGTACAAGTGTCACGGAGTCGGTTTCTGAAAATAAACCAAAAGATCTTTGGCAGACAAGTACAGTTGATGAAGATACTATTCCtagttttcaaaaaattattGATTCAAGCAAAGTTGATTTAAATCAGTTCACTGAACAAGTCTACGAGGATGAAGATACACAGCAGTCTTTAGAAGATGGAAAAGTGTATTTAGAAGTGTCTGACGATGCTGATGactatataaaaatattgggTGTTTAG
Protein Sequence
MTSINNALNSIINRKKDFCCLCLCSLDEEPIRLNDEVVVNIHSYEYDTVISEVLNFIFDQEMCSYINTFNALCDQCTKSAINCYRFKHTCLKNAEYLTDVLDGVTNNFEYATNELYDCKSLYVSLNLLDLTSKQFYDTKKSVNTPRAALRRFRTLDNTNKIKVEDMILKKIKKEEYNENGKVKNRKTRNTTDIPTCEMLYDKNNRDSLKCRECYKEYPTIWNLRNHFIRVHAPKVFKCSECPRSYGSASFLEAHKSDSHCTIVCSECGKTFNNKHTLKMHELGHHLSLVCQDCGRVYKNKTTFKKHIDLNVCGKETRANPAEATFTCDYCNKKYTQKVSLRVHIQHEHGNYKSHVCEWCGKKFWAQSRLKAHSVKHTKERNFPCSICGGKFVTRESLLYHTRTHTGEKPYKCPHCECRFLSASRRTDHVKRHHIGATLECDICHSKFNSKTFLLKHKKAHTKSESKGNLTYEDVKTMMQPNHKHQSTSVTESVSENKPKDLWQTSTVDEDTIPSFQKIIDSSKVDLNQFTEQVYEDEDTQQSLEDGKVYLEVSDDADDYIKILGV