Cpyr034219.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cosmia pyralina
Gene Symbol
-
Assembly
GCA_946251865.1
Location
CAMIUE010001421.1:1-6522[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0012 0.15 14.0 5.3 2 23 249 270 248 270 0.96
2 16 0.52 61 5.7 2.0 2 23 274 295 273 295 0.97
3 16 0.0014 0.16 13.8 1.5 2 23 381 403 380 403 0.96
4 16 0.00055 0.065 15.1 2.5 1 23 409 432 409 432 0.97
5 16 0.028 3.3 9.7 0.1 1 20 436 455 436 457 0.93
6 16 0.0045 0.53 12.2 0.8 1 21 465 485 465 488 0.94
7 16 1.2 1.4e+02 4.6 1.0 1 23 493 516 493 516 0.85
8 16 0.00018 0.021 16.6 0.1 2 23 529 550 528 550 0.97
9 16 0.0098 1.2 11.1 1.6 1 23 556 578 556 578 0.98
10 16 0.45 53 5.9 2.4 2 23 584 604 584 604 0.96
11 16 0.00038 0.045 15.6 1.0 2 23 610 631 610 631 0.97
12 16 0.054 6.4 8.8 0.1 2 23 636 656 635 656 0.95
13 16 3.5e-05 0.0041 18.9 3.0 1 23 703 725 703 725 0.98
14 16 0.0014 0.17 13.7 1.4 2 23 731 752 730 752 0.96
15 16 0.063 7.4 8.6 0.8 1 23 758 781 758 781 0.93
16 16 0.0028 0.33 12.9 0.7 1 23 786 809 786 809 0.96

Sequence Information

Coding Sequence
CCACTATCCATATCAAAATTTACCGACTCCCATAGAATACCATTTAGAGAAGTTGAAAATTTACCATCTACATCAAAAGAACCAGTATCTCTACCAGAATTTACTTGCAAATCCCGAGAACCATTAACAGAAATTGAAAATGTGCCATCACAAGGTCTTGAAAATATGGGCAGTTTCAAGTTGAAGCTCAGAACTGTCCTTCACAGTACAAAGTATTGTGGGATATGCTTGGAAAGTGACGATAATATGAGCACCATTGACGAACATCTGGAGATCATTGTGAATGAACGGACTCACACGAAAGCTTTGAAGGCTATAATTGATGTAGTGTTTAAAGAGACTCATTACAGCCTAGCAAGTTCACTAATATGCAACAGTTGTGAAGAAAAACTGATTCAGTCAtacattttcatagaaaatgcaAAGGAAACATATAAGATATTAGACAACTATGTCAACGATTTGTTTAGCAAATCGGATGATATTTGCAATCATTTGCCGAAGGCAAGCATTGAAAGTACAAATGTTGTTATTGTATTAGAAAATAATATCCATGACTCTCCTgataaaaggaaaagaaaagaTGAGTTTAACATAATGGcggaaaaaaataatgaaatcttTGATGTAAGAAAAGAGTTTACtccaaaaagaaagaaattcgAATGTGTGAAATGTCTAGTATTGCTACCGTCACTCAGAGCGTTAAAGATGCATAGAATGAAATGTAAGAAGCGGACATTACGATGTAGACAATGTTTTAAGacatttaataataaacaacatTTAAATGTACATTACAAACTGCATTTGAAAGTGAAATGCAAATTTTGTCCTGAAATACTTCATAAAAAGGAATTACTGGACCATCTTAAAACTAAACATGGAGATTCTTTACTGAAATGTTTGAAATGTGAACTGTTTTACCCATTAAAAACTTATCAAAGTCACACTAAAGTCTGCCAACAAATAAAAGAAGACAAACCTCAATGCTTGATGTGTCTAAAGACCTATACTGAAAAGGAATTCAAGTCCCACACCTGCAGGTACAGCTGCCCAGAATGTACTGAAATACCTTGCGTGCATTATAAGTATCTGAAGTCATATAGAGAACAGACTTTAAACAACGTGGACAAGACCAAATGTGTTGACTGCAACTATGTTTGTACAAGAAAAGAGAATTTACTTGGACATGTGAATAAggatcatttaaataatcatccatATACTTGTGATAAATGTGGACAACAGTTCTATTCTAAAGTAGTTTTAAAAGCTCATATTCATAAGTTCCATGAAAACTGTTTTGTGTGCCAGTATTGTGATTCAGAATTTAGAAATATTAACAACTACGAAATTCATGTAATATCCTGTGAGGATATCAAAAGGAAGTTTGCTTGTGCAAATTGTCCAGCCTCTTTTGATTCCTCTGGCAGTTTGACGAACCATATAAAATGTAGACATAGCACGGATATTTTTCCATGTGGCCTTTGCAATAAAAAGTTCCTGAAAGATTCTAAAAGAAAAGAGCATATGGTTAAAGTGCATAGCAGTCTCAAAATTAAGAATAGAGATAAAAATGTAGAATGTGTTGTGTGTCAAGAGAAGTTTGATGATAAAGGAGAATTGGTGCAGCATATGAAATCTCATGGTCCGCATACTATGTATCCATGCAGAATATGCAATACAGAGTATCAGACTCTGAGACAGTTTCGGGCACATAATCGCAAACACAACGGACCATTTGCTACATGCCACGTTTGTGGTAAACAAATGAGAGAAATCCTACTAAAAAAACATCTGACTACCCACTCAGATTCTGTAGAAACATGCGAGACTTGCGGCAGGTCTTTTCAAAACATCACTCTATTAAAATACCACCAGAAAGTTCATTTAGAAAGTGTCCCATGTCCTAAATGTAAGAAAATGATCAACCCAGCCAGACTACGGCGGCATTGGAGAGGGCATCTAATGGAAGAGAATCCTGCTCAAAAAGGAATTAGGAAACAACAGCCAAACTTAAAATGTGAACGGTGCGAGTATAAGACATGGAACAACACACTTCTAGAATGTCACATGAATCGccatcatttaaaaataaaaccatatgTCTGCCATATATGCAGCAAAGACTTCATAGGAAAACATTTACTCAGAAAGCATATTGAAACGCATGACATGAAAAGCGTTGTCTGTATGGTGTGCTTGAAGAGTTTTGCCAACTCAACTTGTTTGAAAATGCATTTGCGTTTACACACAGGTGAAAAGCCTTTCACTTGTGAAATATGTGGGGACCGATTTCGGTCATCAAGCATTATGAACGTACACAAGTTAAAAAAGCATTCCGGCAAGAGTTATACTTGTCCGTTATGTTCAAATAAGTTTTTTACTGTAAGAGATTTGCGAAGACACGTGATTAAAGTGCATTGGAAGCAGAAAAATAAGAAGTTTGACCCTCGAGAGTTGAAAGGGCTAGAAAAGGAACATTATCATTTGTTTCATGACGGTAGGAGGGTTAAAGTTGCCGACGAAGATGTCGATTTTTATATGCCTTGTTAA
Protein Sequence
PLSISKFTDSHRIPFREVENLPSTSKEPVSLPEFTCKSREPLTEIENVPSQGLENMGSFKLKLRTVLHSTKYCGICLESDDNMSTIDEHLEIIVNERTHTKALKAIIDVVFKETHYSLASSLICNSCEEKLIQSYIFIENAKETYKILDNYVNDLFSKSDDICNHLPKASIESTNVVIVLENNIHDSPDKRKRKDEFNIMAEKNNEIFDVRKEFTPKRKKFECVKCLVLLPSLRALKMHRMKCKKRTLRCRQCFKTFNNKQHLNVHYKLHLKVKCKFCPEILHKKELLDHLKTKHGDSLLKCLKCELFYPLKTYQSHTKVCQQIKEDKPQCLMCLKTYTEKEFKSHTCRYSCPECTEIPCVHYKYLKSYREQTLNNVDKTKCVDCNYVCTRKENLLGHVNKDHLNNHPYTCDKCGQQFYSKVVLKAHIHKFHENCFVCQYCDSEFRNINNYEIHVISCEDIKRKFACANCPASFDSSGSLTNHIKCRHSTDIFPCGLCNKKFLKDSKRKEHMVKVHSSLKIKNRDKNVECVVCQEKFDDKGELVQHMKSHGPHTMYPCRICNTEYQTLRQFRAHNRKHNGPFATCHVCGKQMREILLKKHLTTHSDSVETCETCGRSFQNITLLKYHQKVHLESVPCPKCKKMINPARLRRHWRGHLMEENPAQKGIRKQQPNLKCERCEYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLRKHIETHDMKSVVCMVCLKSFANSTCLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSGKSYTCPLCSNKFFTVRDLRRHVIKVHWKQKNKKFDPRELKGLEKEHYHLFHDGRRVKVADEDVDFYMPC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00446552;
90% Identity
iTF_00726761; iTF_00173516; iTF_00425746;
80% Identity
-