Cpyr030121.1
Basic Information
- Insect
- Cosmia pyralina
- Gene Symbol
- -
- Assembly
- GCA_946251865.1
- Location
- CAMIUE010001182.1:295438-304774[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00092 0.11 14.4 1.3 1 23 297 320 297 320 0.94 2 12 0.0049 0.58 12.1 2.1 1 19 329 347 329 351 0.92 3 12 5.6e-05 0.0066 18.2 2.8 2 23 357 378 356 378 0.97 4 12 0.006 0.71 11.8 0.8 1 23 382 405 382 405 0.94 5 12 0.0074 0.87 11.5 1.6 1 23 408 430 408 430 0.97 6 12 0.00057 0.068 15.0 0.6 2 23 509 530 508 530 0.96 7 12 0.2 24 7.0 0.2 2 23 550 572 549 572 0.95 8 12 1.2e-06 0.00014 23.5 4.1 1 23 578 600 578 600 0.98 9 12 0.00018 0.022 16.6 2.9 1 23 605 627 605 627 0.98 10 12 0.00017 0.02 16.7 3.7 2 23 634 656 633 656 0.96 11 12 4.2 4.9e+02 2.9 1.0 1 19 664 682 664 683 0.86 12 12 1.9 2.2e+02 4.0 3.4 3 23 696 717 695 717 0.88
Sequence Information
- Coding Sequence
- ATGGAAGGCGAAGATTGTAACTCGAATTCGGAAGTGCCTCACCCAATACTGTTTATGCCAAGGGTGTGTACAACGTTGGTGGCCAATGGTGAAGTGTCAGAACATTTGTTTTTACACTTGAACATCTCAACACCAGACCCAGAAGGCAATCAGGTTGCCATGTACAAGGGTATCTGTCATGTACAGATCATTGAAGGAAGGAATATCAACATCAGGTACGCACCACCAAGTAGTCACTCAAATAGTAGCTCAAGCACTGACAACAGAAATGTGATTCTGAATGAAGCTAATCAGATAGCAATACCTGCTTACAATGATTCTCAAGTCTGGATCGACCCGGCTAGGAGCCCGTTTGTCTACAACCGCTGCGATTCACCGTCTCTGGAGACCACCATACATGAGAGTAATGAGAACCACATTACATTGGAGCAGCACAACacatacttaacacaaaatgtgTATAGTTACAGTGAAGCTATTAGGTACTCTCCTATTAGTGAGGAAGAAAACTCAGTCAAGATACAAGAAAATGTTAGGAATTCAGACATCCATAAATTCTATGCGGACGAAGAACTTGAATGTGGGGTGTTTCTGTCCCAGTTGTGTGACGAGATCACTGAGAAAGATGCTAGGGCACGGGAAGAGATGAAGTTTGTTAGTCTGCAGGCAGACAATGAAGCGTTGAAACAGCTGATGTCTACAAACATACAGTCTGCGTCGAGGCAGCAGAAGACAATATTGTTTGTAGGTCTTGACTCTGGCTCCGGGCAGACAGTGCAGAACATTGCCATCAATGATCCTTCACTGGAGTGTGTTGGAGCTGATGAAGTGGGGAGTAATATTACTATAGGGGACTCCAACATCTCAAACAATCCACGCGCGAAAAAATACCAGTGCAACAAATGTAAACAGATATTTGACCAACTATCTTCCTTCAAACTCCACGTGGTCAGCAGCCATCAGCGCTCCTCTAGCACCCTTAACTTCATGTGCACGGAATGCGGGAAAAGCTTGAAGAACCAAGCAAAGTTTGAGCAACACTGCCTCGGTCACGGCGACCCGGATCTAGAATGTAGCAGGTGCCACAAAGTCTTCGCGTCAAAATTCACCTTACGCAATCACCTTAAGATACATTCTCGAATGTTCCCCTGCAGCTACTGTGCAAAGAGTTTTGCCACTATGCAGGGATTGCACGCACATTCATCTAAAGTTCACTTCAAATTTATGTGCGGAACGTGTTCGTTTGTTTGCGAAACTTCAACTAAGTTGATGGCTCACCAAAGAGCTCATAATAAGAGCCGCTCGAGCTCTTCGACCAGCTCCAGTGAATCTGAATTCGTTGAAGGCATGATGCTAGAGGGCACCTTCGAGGGGCTGAGTGATATTTCGGTGGCAGAAGAGATAGTCAAGGAAGAGGAGGAGGAAATTCTACAAACTCCTGACTCGGTTATCGCGAAGGTGATTTCCAACAATGTATTTCAATCTCAATCCAAGACAAACAAGCCACAGAGGAAGTTTAACAAGACCTGCGAAGTGTGTCTAAAAAAGTTCGACCGGACCGGTGACCTCAAGAGGCATCTCATCGAGCATGTGATAAGGAGCACCCTGGCCAAGAACCCAGTGAACAAGTTCGGTGCCCTCAACATCCGCTGCGAGATCTGTGAGGAACGAGTATTTACTAAAATCGATAGATACAAAGCGCATTTGAGAGAACACGCAAAACTCACTATCTACAAGTGTACCTTTTGCGACAAATCCTTCAGCGACTCCAGTAACTTttctaaacacaaaaaaatccaCGGCACCAACTACTTCCAATGTGACATGTGCCAACGTAAGTTCAATTCCAAGAAAATGATCACTCGGCATATGGAGTACCACAGCAAAAATCAGCCTCTGAAATGTCAATATTGCGAGAAAGTGTTCCATTTTGAGTCTATGCTGAATAAGCATATGAAATACACGCATACCAAGCTAACGACAGGCAGGTTCAGGTGTAAGTTCTGCCTTCAGCAGTTCAGAAGTTTGAAGGAGAAGTGGGACCATGAATGGGCAGATCATAAAGCCAGGAAAGAGATTGTGGACTGCGTGCTCTGTGAGTCCCGGTTTAGGAAGTTCTCAGAGTTAAAGAAACATTGTATGAAGGAACATGATACCATCTTACCTCCAGCTAAAAGGTCGCTAAGATGGGACTATACGCCGATGAGAATTGATCATTAG
- Protein Sequence
- MEGEDCNSNSEVPHPILFMPRVCTTLVANGEVSEHLFLHLNISTPDPEGNQVAMYKGICHVQIIEGRNINIRYAPPSSHSNSSSSTDNRNVILNEANQIAIPAYNDSQVWIDPARSPFVYNRCDSPSLETTIHESNENHITLEQHNTYLTQNVYSYSEAIRYSPISEEENSVKIQENVRNSDIHKFYADEELECGVFLSQLCDEITEKDARAREEMKFVSLQADNEALKQLMSTNIQSASRQQKTILFVGLDSGSGQTVQNIAINDPSLECVGADEVGSNITIGDSNISNNPRAKKYQCNKCKQIFDQLSSFKLHVVSSHQRSSSTLNFMCTECGKSLKNQAKFEQHCLGHGDPDLECSRCHKVFASKFTLRNHLKIHSRMFPCSYCAKSFATMQGLHAHSSKVHFKFMCGTCSFVCETSTKLMAHQRAHNKSRSSSSTSSSESEFVEGMMLEGTFEGLSDISVAEEIVKEEEEEILQTPDSVIAKVISNNVFQSQSKTNKPQRKFNKTCEVCLKKFDRTGDLKRHLIEHVIRSTLAKNPVNKFGALNIRCEICEERVFTKIDRYKAHLREHAKLTIYKCTFCDKSFSDSSNFSKHKKIHGTNYFQCDMCQRKFNSKKMITRHMEYHSKNQPLKCQYCEKVFHFESMLNKHMKYTHTKLTTGRFRCKFCLQQFRSLKEKWDHEWADHKARKEIVDCVLCESRFRKFSELKKHCMKEHDTILPPAKRSLRWDYTPMRIDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00374544; iTF_00375656;
- 90% Identity
- iTF_00374544;
- 80% Identity
- -