Basic Information

Insect: Cosmia pyralina
Gene Symbol: -
Assembly: GCA_946251865.1
Location: CAMIUE010000885.1:116670-142709[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.22 25 6.9 0.8 6 20 12 26 6 28 0.86

2 13 0.043 5.1 9.1 0.4 2 20 34 52 33 54 0.93

3 13 0.78 92 5.1 0.5 1 12 213 224 213 233 0.83

4 13 0.87 1e+02 5.0 0.1 1 19 372 390 372 390 0.97

5 13 6.4e-06 0.00075 21.2 1.1 1 23 404 426 404 426 0.99

6 13 0.92 1.1e+02 4.9 0.6 1 10 451 460 451 472 0.71

7 13 0.0003 0.036 15.9 0.3 3 23 480 500 478 500 0.96

8 13 0.00087 0.1 14.4 2.3 1 23 516 538 516 538 0.98

9 13 1.6e-06 0.00019 23.1 4.5 1 23 544 566 544 566 0.98

10 13 0.00059 0.069 15.0 5.2 1 23 572 594 572 594 0.97

11 13 1e-05 0.0012 20.5 0.4 1 23 600 622 600 622 0.98

12 13 0.00048 0.057 15.2 1.1 1 23 626 648 626 648 0.98

13 13 0.00022 0.026 16.3 0.1 1 23 656 679 656 679 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.22	25	6.9	0.8	6	20	12	26	6	28	0.86
2	13	0.043	5.1	9.1	0.4	2	20	34	52	33	54	0.93
3	13	0.78	92	5.1	0.5	1	12	213	224	213	233	0.83
4	13	0.87	1e+02	5.0	0.1	1	19	372	390	372	390	0.97
5	13	6.4e-06	0.00075	21.2	1.1	1	23	404	426	404	426	0.99
6	13	0.92	1.1e+02	4.9	0.6	1	10	451	460	451	472	0.71
7	13	0.0003	0.036	15.9	0.3	3	23	480	500	478	500	0.96
8	13	0.00087	0.1	14.4	2.3	1	23	516	538	516	538	0.98
9	13	1.6e-06	0.00019	23.1	4.5	1	23	544	566	544	566	0.98
10	13	0.00059	0.069	15.0	5.2	1	23	572	594	572	594	0.97
11	13	1e-05	0.0012	20.5	0.4	1	23	600	622	600	622	0.98
12	13	0.00048	0.057	15.2	1.1	1	23	626	648	626	648	0.98
13	13	0.00022	0.026	16.3	0.1	1	23	656	679	656	679	0.96

Sequence Information

Coding Sequence: ATGGGAGGCCAGCTATTGAATTGCCCCGTTTGTTGCAATACGACTTTTAGTTCTAAACAATCTCTACTTGAGCACTTGACTAATGCTTTAGAGAATGTATATTGCCCTGTTTGTAACTACAAATGTCCCTCATTAACACACCTTGTAGAGCATTTAGCGCAGGATAGTTGTCAGCCAACTAACAATGTACATACCATTATATTTGAGCGCCGATCAGATGAGGACAACATTGAAAACTCATCAGTTATTGGAAATTCTGAAATGAAAGTATTTCAGAGTGaaataaatacaaatgaTGGGAGTCACTTTACAACTGGACAAACCTACGAAGCTCAGGTGGCCTTGAATGATGCCAACAAAATGTATGTGGAATTGTTTAGCAAGCAGTTGAAACCATGCCTTCAAACACGAGAATTTAAACTGGTAAAGGAAAATGGGGAGAGTCGGTACATGATTGTCACTCAGGAAGATAATGATTTGAATGCAGGAAGCACTATTGTAACTAAACAAAATATTGATGGAACTATATCACTGACTACTGTTaaagATATGAACCTGGGTTCAGAGAATTTAATAACACCAGACAATATACAAGAAACTCAAGAGGATACTCAAGAAGATTGTCAAGAGGAGATCTACAGCTGTAACACTTGCAAAGTGTCATTCTCATCCGTTATAGAGCACATACAGAACTATCATAATGATCAGGATGTTGTTGTCGAGgaaCCAATGGAAGAGGGTCACACAGAGTCAGTCCCTAAATTCGAGCCAATGGAGAATGAAGACACATTGGTGACCACAGACAAGCAGACACCGCGGCGCGTCATCACTGACACGGGTGATATTGTGGAGGAGCCACACGCCACGGTTGTGTTTAAATCTGGTGATCAAATGATTTCATCGGATCCATTGAGCTTGGataaaacgcaAGAACCAAATAAAGCTGTGGAAAAAGGACTGCGCGTCGTTACGAAACGTTTCTTGCAAGTGGACAAACTCTGCGACAGTGTCATTAAAGATGCCATCCAGACAGACGCAAAAGATAAAAGCGGTCCTTATCACAAGGTAATCGTCAAAGAAGTGCCAACGGACAACGGGTTCGCAATCAAAATGTACCAATGCTTAGCGTGTGATATATCTGTCACTAATTTGGATGAGTTCAAATTACATCCATGTAAAGTATaTTCTGTTGTCACTGGGCCAGTATCATACGAATGTACTGTATGCAACACGGTCTTCCCAACTAATAAGTCTTTGAAACTACACAAACGGATGCACGATCCAGTCAAAGCACGCCCCATAGAGCCTCCGGTAGAAAACACAGACGGTTCAGAAGTGAGCGAAGGCAGATACCGATGTACTTACTGCAACAAAATGATCCCTATTGACTACAGGACTATCCACCAGAACTCACACAAAACCTCTGAGAAAATGAACTGCGGAATTTGTAATAAGAAATTTACATCTATAGAGTATCTAGAAATGCATACGAATGTACATAATGTGGATAAGGCGCCAATGAACAATCAAGATAAGAACCTACCATACAGTTGTTTGTATTGCAACAGAAGGTTTGCTAGGCCGCACGAAAAGGTGAAACATGAAAGAATACATACAGGTGAGAAGCCCCACTCGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACACTGCACATGCGCACGCACACCGGCGCGCGCCCCTACGCCTGCCCGCATTGCGGCAAGAGGTTTAAAGCACACAGCGTGTACAACCACCATCTGCTGACACACTCTGAAGTACGCGCCTATAAATGCCCGTTCTGTCCCAAAGCGTTCAAGACGTCTGTGCAGCTCGCCGGACACAAAAACTCGCATACGAAGCCGTTTTCTTGTCAACATTGTAATAgGCCATTCGCATCTTTATACGCGGTTCGAGTCCACACAGAAACACATGCGCGTCAGAACAACTTGAAATTCTCGTGCGAACTATGCGGCGCCAGCTACGCGAGAGCCTTCGCTCTTAAGGACCACATCAAGCAAGCGCATGGTGAACAGAAACAAGAGCAGTCGATTCCTGGCGATGAAGACTGGTTGACAAAAGACAGCTCGGATACGGATGGAATACAGATAGACCTGGGAATGACGGCCAACGAACTAATAGTTCCTTAA
Protein Sequence: MGGQLLNCPVCCNTTFSSKQSLLEHLTNALENVYCPVCNYKCPSLTHLVEHLAQDSCQPTNNVHTIIFERRSDEDNIENSSVIGNSEMKVFQSEINTNDGSHFTTGQTYEAQVALNDANKMYVELFSKQLKPCLQTREFKLVKENGESRYMIVTQEDNDLNAGSTIVTKQNIDGTISLTTVKDMNLGSENLITPDNIQETQEDTQEDCQEEIYSCNTCKVSFSSVIEHIQNYHNDQDVVVEEPMEEGHTESVPKFEPMENEDTLVTTDKQTPRRVITDTGDIVEEPHATVVFKSGDQMISSDPLSLDKTQEPNKAVEKGLRVVTKRFLQVDKLCDSVIKDAIQTDAKDKSGPYHKVIVKEVPTDNGFAIKMYQCLACDISVTNLDEFKLHPCKVYSVVTGPVSYECTVCNTVFPTNKSLKLHKRMHDPVKARPIEPPVENTDGSEVSEGRYRCTYCNKMIPIDYRTIHQNSHKTSEKMNCGICNKKFTSIEYLEMHTNVHNVDKAPMNNQDKNLPYSCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCGKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHTETHARQNNLKFSCELCGASYARAFALKDHIKQAHGEQKQEQSIPGDEDWLTKDSSDTDGIQIDLGMTANELIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01440338;
90% Identity: iTF_00375579;
80% Identity: -