Cpyr015308.1
Basic Information
- Insect
- Cosmia pyralina
- Gene Symbol
- -
- Assembly
- GCA_946251865.1
- Location
- CAMIUE010000512.1:290108-294408[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0028 0.33 12.9 0.4 1 23 57 80 57 80 0.94 2 17 0.21 24 7.0 0.0 2 23 109 131 108 131 0.92 3 17 3.4 4e+02 3.2 5.1 2 23 154 175 153 175 0.97 4 17 0.00013 0.015 17.1 0.1 1 20 179 198 179 200 0.94 5 17 0.00038 0.044 15.6 0.6 2 23 280 302 279 302 0.96 6 17 0.014 1.6 10.7 1.5 1 22 308 329 308 332 0.88 7 17 8.8 1e+03 1.8 0.3 7 23 344 361 338 361 0.82 8 17 0.0028 0.33 12.9 0.4 1 23 443 466 443 466 0.94 9 17 0.26 31 6.6 0.0 2 23 495 517 494 517 0.92 10 17 3.4 4e+02 3.2 5.1 2 23 540 561 539 561 0.97 11 17 5.8e-05 0.0069 18.1 0.1 1 23 565 587 565 587 0.95 12 17 0.00025 0.029 16.2 2.1 1 23 592 615 592 615 0.97 13 17 0.63 75 5.4 0.5 2 13 623 634 622 645 0.83 14 17 0.00021 0.025 16.4 0.4 2 23 653 675 652 675 0.96 15 17 0.0023 0.27 13.1 0.7 1 23 681 703 681 703 0.97 16 17 4.5e-06 0.00053 21.7 1.3 1 23 709 731 709 731 0.98 17 17 6.2e-06 0.00073 21.2 1.4 1 23 737 760 737 760 0.98
Sequence Information
- Coding Sequence
- ATGGGCACGGGGCTGCGAGGCGCGAGGGCGGGGCACACTGCAGGCCCAGCTATCGACGGATGCGCTGGCGACGAAACTGCTGACGCGGAATCACACGACGATATATCGAGGCCGGCGCCGCTACAAGTGTTTACATTAGACGCATCGACAGGCATCAATTATCGCGGTTACTTGTGTTCCTACTGCGATTCTCAGTATCCAGACTCTGCAGCCCTGAAGAAACACACACGTGACAATCATAAAGGGCTATACGACTCTGTAATACCAAATGTTAATAAGAACACTATTGACGAGTTTTGTATAAGACTGGACATAACAGATTTACAATGCACACTCTGCGACGCTGACATAGACACACTAGAGAACTTGTTGAAACATCTGGAAGGTGATCACAAAAGAGCTATACATCCGGAAATCAGAAACCAACTCTTTCCATTTAAGTTTGACAGCGAAACCATGAAATGTTGTTTGTGCTTCAGTACTTTTGCAAAGTTTAGAAGTCTGCTAGAACACATGCACATTCATTACAGGAATTTTATTTGCGATGAGTGTGACATGGGATTTATAACCAAATATAGCCTCAGGCGACACGtttcagctcgccgtccggtaaggaacaggcccgggtcgacggcgcgttgtgctccacgcgcgcctcaaagagatgtcagcagtgacggggtcaattgggccgatgccgccggggtcgcgggtagttcgaaagagataccgtggccctggcacgggcaattgaaggagcatggTGAGAGATTTAAGAATCCTTTGAAAAAGGATGAGCACTTGCTGGAAATCCATGGGATCAAGTTGAAGATTGTCAAATGTCAGGCGTGCGACAGGACATTTCCTAACACAAAAGCACTAAGGGTCCACACGAGACGAGACCACTTGATGGAGAGACAGTTCAAATGTACACAATGCGATAAGACATTTTTCTTAGCCGCCGCCTTAAAGTTTCACATGCATATGGAAATACACAGTGACATTAGACGCTTTAAATGCGAGCACAGCGGTCAGGCATTTGTGATGAAAGCCGGCTGGAAGGGACACATGAGGAGTAGGCACGGTACTCGAGATAATCCTATCGAGGATCCGGACTGGGATCCTAAAACAAATAATGAAGATAAAccaaaacgaaaaaaagagaAACAAAGAGCTATCTCTAAAGAGAAAAAACGAGATATCTGTAAGATCACTGAAGCGAGGAGGTTAGAAATGATGGAAGAAATGAAGAAACACCACACAAACCTCAAAGAAATTCTAACTTGCTCCAATGCTACGCCCTTTGTCGGAGTCAATTATCGCGGTTACTTGTGTTCCTACTGCGATTCTCAGTATCCAGACTCTGCAGCCCTGAAGAAACACACACGTGACAATCATAAAGGGCTATACGACTCTGTAATACCAACTGTTAATAAGAACACTATAGACGAGTTTTGTATAAGACTGGACATAACAGATTTACGATGCACACTCTGCGACGCTGACATAGACACACTAGAGAACTTGTTGAAACATCTGGAAGGTGATCACAAAAGAGCTGTACATCCGGAAATCAGAAACCAACTCTTTCCATTTAAGTTTGACAGCGAAACCATGAAATGTTGTTTGTGCTTCAGTACTTTTGCAAAGTTTAGAAGTCTGCTAGAACACATGCACATTCATTACAGGAATTTTATTTGCGATGAGTGTGACATGGGATTTATAACCAAAGGAAGTCTCAGGCGACACGTCGCCGAACATAAAACGGGCGTATATAAATGTAATTTGTGCTCAAAAACCTTTGACACTAAGAAGAAGGCGCAGCGTCATGAAAAAGTTGTTCACGTAAACAAGGGTTTGAAGAATAAGTGTGGGTACTGTAATGAGAAATTTAAGAATCATATGAGAAGGGATGAACACTTGGTGGAAATCCATGGAGTCAAGTTGAAGATTATCAAATGTCAGGCGTGCGACAGGACGTTTCCTAACACATACGCACTAAGGGTCCACACGAGACGAGACCACTTGATGGAGAGACGGTTCAAATGTACACAATGCGATAAGGCATTTTTCCAAGCCGCCGACGTAAAGTTTCACATGGTAACGCATACAAAAACAAGAGACTTCCAATGTACTGTGTGCCTTAAGTCATATAGCCGGAAGGAAACTTTGAGGCAGCATATGGAAATACACAGTGACATTAGACGGTTTAAATGCGAGCACTGCGGTCAAGCATTTGTGCAGAAAGCCAGCTGGAAGGGGCACATGAGGAGTAAGCATGGCGAAGTGGTCTGA
- Protein Sequence
- MGTGLRGARAGHTAGPAIDGCAGDETADAESHDDISRPAPLQVFTLDASTGINYRGYLCSYCDSQYPDSAALKKHTRDNHKGLYDSVIPNVNKNTIDEFCIRLDITDLQCTLCDADIDTLENLLKHLEGDHKRAIHPEIRNQLFPFKFDSETMKCCLCFSTFAKFRSLLEHMHIHYRNFICDECDMGFITKYSLRRHVSARRPVRNRPGSTARCAPRAPQRDVSSDGVNWADAAGVAGSSKEIPWPWHGQLKEHGERFKNPLKKDEHLLEIHGIKLKIVKCQACDRTFPNTKALRVHTRRDHLMERQFKCTQCDKTFFLAAALKFHMHMEIHSDIRRFKCEHSGQAFVMKAGWKGHMRSRHGTRDNPIEDPDWDPKTNNEDKPKRKKEKQRAISKEKKRDICKITEARRLEMMEEMKKHHTNLKEILTCSNATPFVGVNYRGYLCSYCDSQYPDSAALKKHTRDNHKGLYDSVIPTVNKNTIDEFCIRLDITDLRCTLCDADIDTLENLLKHLEGDHKRAVHPEIRNQLFPFKFDSETMKCCLCFSTFAKFRSLLEHMHIHYRNFICDECDMGFITKGSLRRHVAEHKTGVYKCNLCSKTFDTKKKAQRHEKVVHVNKGLKNKCGYCNEKFKNHMRRDEHLVEIHGVKLKIIKCQACDRTFPNTYALRVHTRRDHLMERRFKCTQCDKAFFQAADVKFHMVTHTKTRDFQCTVCLKSYSRKETLRQHMEIHSDIRRFKCEHCGQAFVQKASWKGHMRSKHGEVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -