Cpyr042173.2
Basic Information
- Insect
- Cosmia pyralina
- Gene Symbol
- -
- Assembly
- GCA_946251865.1
- Location
- CAMIUE010002507.1:1-4425[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8 4e+02 2.2 0.0 20 35 333 348 317 358 0.79 2 2 1.5e-11 3.4e-09 37.6 0.0 2 38 550 586 549 592 0.90
Sequence Information
- Coding Sequence
- ATGCTGCGTTGTATCAATTGTGGCCTGAATGTCACTCGAATTAGAAGACACTCGACAGAGTACCTGCCTGTAAATGTCCGAGCAGAAATCCAGGAAAGAAATGCTCTACCAGACATACCAAGCAATAGTGTGGTGTGTCATGAGTGTTGGCTGTTACTAAATGGAGTACCTGGAACAACTGGATTATCTCGTGTTGGTCATGAAAATGTATGTGTACACTGTGGAAGATCTTTATATCGATTAAGAGCTCACATGTTAACCAATAATACTGACAGAGAATTACGTATAAGATCTGTTGTTGAGGAAAGAATAATGCCAAGACATctCCGATCATCAGACCGTATTTGTCACACTTGTTGGCAGAGGTGTCATAGTTTGGCTGCAAATTACACTGctccatcaacatcatcatccgcAAGTTCTCATGCACCAAGCGTTGTGAATCCCAATTCTCAAGAATTGCCTGATAACGAAATGGAGAGTTCACGCCCTGATGATGAAGTGGTATCAGTCACGACTACTGTGGGAAGTACTCAaagtgtacctactataattttGTCCCAATTCGGGAGAGCATCGGATACACAAGCTCATTGTTTTTTTCCTGGGTGCACTCGCACTGAGAGACTTGTGGTACCACAATCTATTAGAATAAGTCTTTTTGCTGATTTTAGGTACTATGTACCACCAAATTGTCGCATCTGCCACTATCATTTGAGAACCAATTTATGGCACCAGCttaatgaaattgaaaatgtgaATCATTCATTCACAGAGGATTACATATATGATTTTACATCACTATTACAACAAGAGCGATCAGTTGACTTTGAAAACATTCACATGATGGATGACCACTTAGTACATTACTGGTTTGGCTTAAGTAAAGAGAAATTCCAATCATTGTTAGCAGAAGTACCCAGATTGTCTTCTATGTATAGGGGATCAACTGCACTAGCTGCACTATTGTTGAAGTTGCGAAATGGAGACTCAAATGAGCGAATTGCTTCATTATTTAAAATGCCCCGGAGTACTTTAGAGAATCTAATGTCTAAGGCAAGAGAAATTATGCACCAAGATTTTGTGCCTAATCATTTAGGCTTAAGTCATATATCTAGAGAGGAAATTGCAAATAGAAATCTACTGATACCTACTAGTCTGTTTGGGGGTACAAATACAAATGGTGAAGCAATTCCAATTGTCATTGCAGATGGTACTTATATATATTGTCAAAAAAGCTCTAATTACAAATACCAAAAAGATACATACTCATTGCACAAGTATAGGAACCTAgtaaaaccatttttatttgtatgctgTGATGGGTACATTATAGAGATTCTAGGCCCTTAtccagctacaacatcagatGCTGAAATTATGCAAAATGAATTTAATGAATCACAACCGTTGAGACAATATTTCAACGAAAATGACGTTTTTATCCTGGATAGAGGATTTAGGGATGCTGTATCATTGTTGGAATCATGCAACTATCGTGTCCATATGCCATTGTCTTTAAGAGAGGGAGAAACTCAGTTGTCGACATTAGCAGCGAATAAAACACGAGCTGTGACAATTTGCCGATGGGTGGTAAACATAATGGTACGTATTTATAAAAGAAAGACAAGTAGAGGGGAGTGGTCTAAAGAAGCGATGAAAAAGGCGGTAGAAGATGTTTTAGCGAAAAAATTTGGATTTAGGAAAGCTGCTGCGAACTACGGTGTGCCACAGTCTACTTTGGAGCGATACgttaacaaagtaaaaaaaggGGTAGAAATAACATTTGGAGTGCCCTTGGGGCCCATTAAGAAGGTATTCAATACGAAAGAAGAGCTGGAGATTGTTTCATATTTGAAGCACATGGAAGAACGGCTTTTCGGCTTAACTACTCTCGATCTCCGACGCATGGCATACGAATTGGCT
- Protein Sequence
- MLRCINCGLNVTRIRRHSTEYLPVNVRAEIQERNALPDIPSNSVVCHECWLLLNGVPGTTGLSRVGHENVCVHCGRSLYRLRAHMLTNNTDRELRIRSVVEERIMPRHLRSSDRICHTCWQRCHSLAANYTAPSTSSSASSHAPSVVNPNSQELPDNEMESSRPDDEVVSVTTTVGSTQSVPTIILSQFGRASDTQAHCFFPGCTRTERLVVPQSIRISLFADFRYYVPPNCRICHYHLRTNLWHQLNEIENVNHSFTEDYIYDFTSLLQQERSVDFENIHMMDDHLVHYWFGLSKEKFQSLLAEVPRLSSMYRGSTALAALLLKLRNGDSNERIASLFKMPRSTLENLMSKAREIMHQDFVPNHLGLSHISREEIANRNLLIPTSLFGGTNTNGEAIPIVIADGTYIYCQKSSNYKYQKDTYSLHKYRNLVKPFLFVCCDGYIIEILGPYPATTSDAEIMQNEFNESQPLRQYFNENDVFILDRGFRDAVSLLESCNYRVHMPLSLREGETQLSTLAANKTRAVTICRWVVNIMVRIYKRKTSRGEWSKEAMKKAVEDVLAKKFGFRKAAANYGVPQSTLERYVNKVKKGVEITFGVPLGPIKKVFNTKEELEIVSYLKHMEERLFGLTTLDLRRMAYELA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -