Cpyr019615.1
Basic Information
- Insect
- Cosmia pyralina
- Gene Symbol
- -
- Assembly
- GCA_946251865.1
- Location
- CAMIUE010000680.1:1093445-1095064[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-10 9e-08 33.1 0.1 1 39 3 41 3 47 0.91 2 2 2e-06 0.00043 21.3 0.1 1 45 82 126 82 126 0.97
Sequence Information
- Coding Sequence
- ATGTGGACAGAAGAAGACTTACGTGCAGCTATGGCAGCTGTTACAGAAGGTAAGGTGTCGCAATATGTGGCCGCAGCTCGTCATGGAATTCCTAGACAAACTCTCAGAGATCATTTGAAGTCGGGGAGCTTAGTAAAACGCACGGGACGAATTTTAACATTCAGCGAAGTACAAGAAAAGACACTCGTGAAAAGAATACTTGATCTTTCAAAAAGTTCGAAGCTTGCAAAACTACCTTTGTGGACAGAAGAAGACTTACGTGCTGCTATGGTAGCTGTTACCTGGGGATATATGTCAAAGAAAGCTGCATCGGATCATTATGGAATTTCTATACCAGCTCTCAGCCATCATTTGAGGACGGGAAGCTCAGTAAAACGAACGGGACGAAATCGAATACTGAACGAagtacaagaaaaaacactcgTGGAAAGAATACTCCGCCTTTCAAAAAGTGGAATTTCACTCACCCCGAAATTTATTCGCAGGCAAGCCTTTGATTTTTGTCAAGAAAACGATATtagacataattttaatttgaatgcgGGCCTTGCAGGCGCGGATTGGTATAATGGGTTTTTAAATCGACACCCAGAGATACCAGTTGCACGACGCCGAAGATTTAAAAATCCGGACATAGAGCAAAGTTACGATGAAGGCATTCCAGTGTAG
- Protein Sequence
- MWTEEDLRAAMAAVTEGKVSQYVAAARHGIPRQTLRDHLKSGSLVKRTGRILTFSEVQEKTLVKRILDLSKSSKLAKLPLWTEEDLRAAMVAVTWGYMSKKAASDHYGISIPALSHHLRTGSSVKRTGRNRILNEVQEKTLVERILRLSKSGISLTPKFIRRQAFDFCQENDIRHNFNLNAGLAGADWYNGFLNRHPEIPVARRRRFKNPDIEQSYDEGIPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -