Cpyr018518.1
Basic Information
- Insect
- Cosmia pyralina
- Gene Symbol
- -
- Assembly
- GCA_946251865.1
- Location
- CAMIUE010000635.1:327922-340360[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.9e-11 6.5e-09 36.7 0.0 4 39 285 321 282 325 0.90 2 4 3.7e-10 8.1e-08 33.2 0.3 2 39 337 374 336 378 0.92 3 4 1.6e-13 3.6e-11 43.9 0.0 2 45 392 436 391 436 0.96 4 4 2.3e-17 5.1e-15 56.3 0.0 1 42 443 485 443 487 0.95
Sequence Information
- Coding Sequence
- ATGGGTAGTATCTTTTGGGAGTATAATGAGGATTCTGGACTATTGGTCCCCAAAGGATCTAGTAGTAATATAGAACACACTTTTGTAGACATGTTAGCCTTTAATGATCTTCATCAATGTAACGCGATACTTAACGAGTCAAATCGTATTTTAGATCTAGTTCTTAGCAGTAATAACATCAAAGCGTTGGTGTCTCAGGCCTCTGTTCCACTTATACAAATTGATCCTCATCATCCAGCTCTGGAGATCTCGTTTAAAACTAATCATAGCAATCCTCTAGTGCAAAATAAAGTCCCGTACTTAAACTTTTATCTCTGTAACTATGAAGCGGTCAACTCTGAACTTGCGAAAATTGTTTGGTCTATTGAATGGAATTCTATAACTAATGTTAACGAAATGTTGCAAAAATTCTATGATATCCTTATGCCAATTATTAAATTGCATACTCCGATTACAAAGCCACGTGATGAGCGCTATCCTGTCTGGTATAGTCGAGCTTTACTAAAGGGCAGTGGCTTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCGGCTGCCACGCCAGTGTGTGTCAAGCAGGAGCGAGCTGAGTCACCACCAGCCACCACGCTTGAGACGCTCGAGTCAGCACCACATAATGCCAAGAGCACATCCCTGTTGGTTCGTCACATGGAGTTCATGAACGTCACCGAAGTGCCTGACTCTACTGACTTCATGCCGCTGCTGGCTGTCAAGGATGAGCCCTCGTCCGAAGGTGAGCAACCACATCTTAGCGGTGAAGACACGAGTGACTCCTGCGGCCGGCAAGCTTCGCCCGCGCCACGACACAGCCCCAAGAGCTGGACCCAGCACGACATGGAACGAGCTTTGGATGCTCTCAGAAACCACCAGATGAGCCTGACGAAGGCATCAGCAAGTTACGGCATTCCGTCCACCACTCTCTGGCAGCGAGCTCACCGGCTGGGCATCGACACGCCAAAGAAGGAAGGAGCGGCCAAGTCCTGGAGCGAGGCTGATCTGCGCGGGGCGCTGCATGCCTTGAGGGCAGGCGCTATCTCCGCTAATAAGGCCAGCAAAGCTTATGGCATTCCCAGCAGTACACTATACAAGATAGCTCGCCGGGAGGGCATCCGCCTGTCGGCGCCATTCAACGCGGCGCCCACCGCGTGGCGCCGCGCCGACCTGCAGCTGGCGCTGGCTTCCATCCGCTGCGGCGCCAGCTCCGTACAGCGTGCTGCCACGCAGTATGGGATACCTACAGGAACGCTATACGGACGGTGCAAGCGAGAGGGTATCGAGTTGTCTCGCTCCAATCCGACGCCATGGTCTGAAGACGCCATGGGCGAAGCACTTGAAGCTGTCAgGGTGGGCCAGATGTCCATCAACCAGGCAGCGATCCACTACAACCTGCCGTACTCCTCGCTCTACGGGAGATTCAAGAGGTGCAAGTATCAGATGCAGGGTGTTCCACAAAATCAGCAGCAACCACACCCCGAGGCTCATAAAATGGAGCAAGAGCACCAACCCCACGAGGTGCAACAGTACTACCACCAGGTACCCCCCCACCAGGAAGCGGACCCGCACACATACGCCCACATGCACGAATATACGCACCAAGACCAGTACGCACAGTACTACCAGGGTTTTAACAGTATTGCGACTAGCTGA
- Protein Sequence
- MGSIFWEYNEDSGLLVPKGSSSNIEHTFVDMLAFNDLHQCNAILNESNRILDLVLSSNNIKALVSQASVPLIQIDPHHPALEISFKTNHSNPLVQNKVPYLNFYLCNYEAVNSELAKIVWSIEWNSITNVNEMLQKFYDILMPIIKLHTPITKPRDERYPVWYSRALLKGSGLEELAPLAPAGPAATPVCVKQERAESPPATTLETLESAPHNAKSTSLLVRHMEFMNVTEVPDSTDFMPLLAVKDEPSSEGEQPHLSGEDTSDSCGRQASPAPRHSPKSWTQHDMERALDALRNHQMSLTKASASYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGVPQNQQQPHPEAHKMEQEHQPHEVQQYYHQVPPHQEADPHTYAHMHEYTHQDQYAQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -