Ccil027960.1
Basic Information
- Insect
- Corythucha ciliata
- Gene Symbol
- Znf131
- Assembly
- GCA_038030265.1
- Location
- CM075942.1:11347753-11349591[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00026 0.051 15.3 1.5 1 21 107 127 107 128 0.96 2 12 9.9e-05 0.019 16.6 0.6 3 23 149 169 148 169 0.99 3 12 8.4e-06 0.0016 20.0 0.7 3 23 177 198 175 198 0.95 4 12 0.00016 0.031 15.9 0.3 1 23 206 228 206 228 0.93 5 12 0.011 2.2 10.1 4.1 1 21 235 255 235 256 0.95 6 12 0.95 1.8e+02 4.1 0.3 3 23 282 302 280 302 0.82 7 12 0.0011 0.2 13.4 0.3 3 23 308 329 307 329 0.97 8 12 0.00012 0.024 16.3 0.7 2 23 335 356 334 356 0.97 9 12 0.00096 0.19 13.5 0.5 1 23 362 384 362 384 0.93 10 12 5.5e-05 0.011 17.4 0.2 1 23 390 412 390 412 0.96 11 12 0.00087 0.17 13.6 4.3 2 23 418 439 417 439 0.98 12 12 0.0065 1.3 10.9 1.9 2 21 446 465 446 470 0.92
Sequence Information
- Coding Sequence
- ATGGAGACGGAGGATTCAAATGCGACGAAATCAGAGGAGGATGACGGGGATTTTTCGGAAGATGACGACCCGGATATTCCAAGATGCGGCGTCACATTGGCTCAGTTGAAGACAAGGATAAAGGAGGAAATCGTGGAGAACGGATTCGACTTGAAGGAGGAGGAAGATGACGGTCCGTTAAATCTTGCAAATGGGAATGGTGACGAAGAGGATAAGAGCGAACTGGAGTTCAAGGTTGCTAATTTTTTAGCCGAGACCAGTGTAAGTCGGCGAAAACTCAAAAAAGTCAATGGGAACTCTATTAAATCAGCATGCAAATTCAAGTGCAATGAATGTTCTGCACTGTTCCGGTACAAATCCACTCTTACTTATCACATGAAGTCAGAATGTGGTACCGGCGTCATTACCGCAGGATCCAAAGTGGTGCGAAACTCGCCCGCCTTATGTAACATCTGTAACAAACAACTCAGCTCACGAACGTCCCTAATGGTCCATTTAAGGATTCATACGGGCGAACGGCCTTTTGGGTGCTCAGAGTGTGGTCAGAGTTTTTCCCAAAACGCTCATCTGAAAGATCACGTGGCTCGTCTTCACTCAACCAACCCCGACCAGTTGTTTTTATGTCGACTATGCAACACCACATTCGCTGACCGAGCGGCTTTACGATCTCACATGGATGAACACGTCGGCCAGCAGCGACCTTTTCAATGTCAACACTGTCGGAAACGATACCAAACTAGAGACCGACTCGAAACTCACTTATGCGCTTCCAGAACGACGCTAACCGACACAGATATAATCGACTCCTCCATAACTCCTCTGCAGAACAAAAAAGGACTCACTTGTTCAGCCTGCGCCTTCTTAGCAACCAGCCGATCTCAGCTCCGCGATCATCTCGCCTCACACCCACTCCCAGTCGCCTGCCCAGAGTGCTCAGAAAATTTTGACTCTTTGTCCGCCTGGAGGAAACACAATCGTCGAAACCACCGGTCGAAACAGAGCAAATGCTCCTATTGTAGTCGCACGTTTCCCTCCGAGTACGACGTACGAGTTCACGAAAGATCTCACACCGGCGAACGCCCCTACCAGTGTACCTTTTGCGGGCGTGGCTTCGCCCGCAAGTCCATACTCGACGTTCACACGACACTCCACACAGGGCGTTGTGACTACGTCTGCTCAGATTGTGGCTCGGCGTTCAACCGTAAAAGTAAACTCGACGTTCATCGAGCCGAACACACTGACACACACGTTCAGTGCGAGaCCTGCAAGAAATCGTTCAAATGCAAAGCCTACCTTATGACGCACTTAAAAACCCACGTCCGCGATTCCACCGCCACTTGTGCAACCTGCGGTCGACTGTTCTCGTCGCGGCGCGGCCTCCGTTCCCACATTACCAAAGGGTGCTCTCACGTTTCGTCCGGTTCAGGCGGATCGTCAATGGTCCCGCACCGTCGAACCGTTCCCTCTTCCCCGCCACCTTTAATTCCCTTGTTCCCTCAGCGAGCTTTAGTCGGGGGCGCGGGTTACGTATCCGTTAAATCTCAATTTAGTTAA
- Protein Sequence
- METEDSNATKSEEDDGDFSEDDDPDIPRCGVTLAQLKTRIKEEIVENGFDLKEEEDDGPLNLANGNGDEEDKSELEFKVANFLAETSVSRRKLKKVNGNSIKSACKFKCNECSALFRYKSTLTYHMKSECGTGVITAGSKVVRNSPALCNICNKQLSSRTSLMVHLRIHTGERPFGCSECGQSFSQNAHLKDHVARLHSTNPDQLFLCRLCNTTFADRAALRSHMDEHVGQQRPFQCQHCRKRYQTRDRLETHLCASRTTLTDTDIIDSSITPLQNKKGLTCSACAFLATSRSQLRDHLASHPLPVACPECSENFDSLSAWRKHNRRNHRSKQSKCSYCSRTFPSEYDVRVHERSHTGERPYQCTFCGRGFARKSILDVHTTLHTGRCDYVCSDCGSAFNRKSKLDVHRAEHTDTHVQCETCKKSFKCKAYLMTHLKTHVRDSTATCATCGRLFSSRRGLRSHITKGCSHVSSGSGGSSMVPHRRTVPSSPPPLIPLFPQRALVGGAGYVSVKSQFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -