Basic Information

Insect: Corythucha ciliata
Gene Symbol: -
Assembly: GCA_038030265.1
Location: CM075938.1:49917757-49919393[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.52 1e+02 4.9 0.8 2 23 31 52 30 52 0.96

2 17 0.00068 0.13 14.0 0.3 1 23 58 80 58 80 0.97

3 17 0.0064 1.2 10.9 2.5 1 23 86 108 86 108 0.98

4 17 0.019 3.8 9.4 1.9 1 23 114 136 114 136 0.98

5 17 0.00075 0.15 13.8 1.8 1 21 142 162 142 164 0.95

6 17 0.0055 1.1 11.1 3.3 1 23 170 192 170 192 0.98

7 17 0.015 2.9 9.7 2.4 2 21 199 218 198 220 0.93

8 17 1.6e-05 0.0031 19.1 3.7 1 23 226 248 226 248 0.98

9 17 2.2e-05 0.0043 18.7 1.7 1 23 254 276 254 276 0.97

10 17 0.0012 0.23 13.2 4.0 1 23 282 304 282 304 0.98

11 17 3e-05 0.0057 18.2 1.2 1 23 310 332 310 332 0.98

12 17 0.00034 0.065 14.9 3.5 1 23 338 360 338 360 0.99

13 17 0.00089 0.17 13.6 1.1 1 23 366 388 366 388 0.96

14 17 0.001 0.19 13.4 3.4 2 23 395 416 394 416 0.97

15 17 3.1e-05 0.006 18.2 2.3 1 23 422 444 422 444 0.98

16 17 0.0076 1.5 10.7 1.2 1 23 450 472 450 472 0.96

17 17 1.6 3.1e+02 3.4 5.1 1 23 478 500 478 500 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.52	1e+02	4.9	0.8	2	23	31	52	30	52	0.96
2	17	0.00068	0.13	14.0	0.3	1	23	58	80	58	80	0.97
3	17	0.0064	1.2	10.9	2.5	1	23	86	108	86	108	0.98
4	17	0.019	3.8	9.4	1.9	1	23	114	136	114	136	0.98
5	17	0.00075	0.15	13.8	1.8	1	21	142	162	142	164	0.95
6	17	0.0055	1.1	11.1	3.3	1	23	170	192	170	192	0.98
7	17	0.015	2.9	9.7	2.4	2	21	199	218	198	220	0.93
8	17	1.6e-05	0.0031	19.1	3.7	1	23	226	248	226	248	0.98
9	17	2.2e-05	0.0043	18.7	1.7	1	23	254	276	254	276	0.97
10	17	0.0012	0.23	13.2	4.0	1	23	282	304	282	304	0.98
11	17	3e-05	0.0057	18.2	1.2	1	23	310	332	310	332	0.98
12	17	0.00034	0.065	14.9	3.5	1	23	338	360	338	360	0.99
13	17	0.00089	0.17	13.6	1.1	1	23	366	388	366	388	0.96
14	17	0.001	0.19	13.4	3.4	2	23	395	416	394	416	0.97
15	17	3.1e-05	0.006	18.2	2.3	1	23	422	444	422	444	0.98
16	17	0.0076	1.5	10.7	1.2	1	23	450	472	450	472	0.96
17	17	1.6	3.1e+02	3.4	5.1	1	23	478	500	478	500	0.95

Sequence Information

Coding Sequence: ATGTATTTCTATCGTAGGAAAAGCGAGAGTCCGTCATCACAGACCCACGATGTTTCTTCATCGTCAAACAAAGACGGTAAAATTCTCCTATCGTGCCGTTTCTGCTCATATACAACCTTCTACTCAGGCTCGATCAAGGTTCACGAGCGCATACACACGGGCGAAAAACCCTTTGCCTGCCCCCAGTGCCCGCACCGGAGTGCGACGTCGGGAAATCTTTATCTCCACCTGGCGACGCACACCAGTGAAAAACCTTTCAAATGCGACCGCTGTCCGTACAGAGCCACGACCAAACGGCTTTTTCAAAGTCACACTCTGCGTCATTTGGGTGAGAAACCGTTCAAGTGTCAGGTGTGCTCGTACGCGTGTTTAAGTGCGACGGTGTTGAGGAAACATATGAAAATTCATTCGAGGGATCGCCGGTTCGTTTGCTACCACTGTGGAGCAGCCTTTTACGAATTGCCCAATTTGAGAGTGCATATGAGGTGTCACACGGTGGGAAAACCGTACAGTTGTGCGTCGTGCGACTTTAAATGTTCCATGCCTAAGTCTTTGCAGCGTCATAAGTTGACGCACACTGGCGAAAAGCCATCCTCTTGCGACGATTGTTCCTACGTGAGCGCGACTAAGTCTCAACTGCTTACTCACAAGAGATGCCATACAGGAGAGAAACCATTCGTCTGTCATTTGTGCGATTATACGTTTTCTCATGCTACGAGTTTGAAGTATCATTTACTAGTACATTCGGGAGTTAAACAATTCGCTTGTTCTGATTGTAGTTATGTGACTACAAGGGCGGGTCACTTGAAGAGTCACATGTTCACACACTCAAAGGAGAAGCCTTACGCGTGTTCAAAGTGCGATTTTCGATGCAAAAGTAGCATCGGCTGGAAGCGTCATCAGCGAAAGCATTCAAGGTTGAGACCATTCAAGTGCAATGATTGTCCCGTCGCGTGTTTCGACAAATTTTCATTAGTGAGACACATTAGAATTCACACTGGCGAAAAACCGTACAAATGCGACCAGTGTGACTTCTCGACAGCATTTTCCCATTCACTGAAAGTCCATCTGAAAAGACACGCTGGGCTGAAAGAACACGCCTGCGATGAATGTTCCTTCAAATGTGTTACTCCAGAAGGACTTAGAGCCCACCAACAAATCCACTCTTTGGATAAACCACTCTCGTGTGATCAATGCGAGTACAAATGCACGCAGTTGAGAAGCTTGACAGCTCACAAGCGCACTCACTCAGTCACCAGACCCTATTCGTGTACCAAGTGTGACTTTACGAGCGCCCATCCAGGGAGTCTGACTCAGCACATGAAACGACACTACGCTATCAAATCTTACACCTGTAAATTATGCTCATATTCAACCAATCGTGCTAATCAATTCGCAGTTCATAAAAGTGAGCATACGGGCGAAAAACCGCACGCTTGCGACCAGTGCGGTTTCAAGTCTAATCACGTTTCGAGCCTTAAGTTTCATAAACGCTCTCACACGGGCGACACGAACTCACGAAAGGATTCACGCGGGCGAGGCAACGTACCGGTGCAACGATTGCTCTCTCGTATTTCCGGATAA
Protein Sequence: MYFYRRKSESPSSQTHDVSSSSNKDGKILLSCRFCSYTTFYSGSIKVHERIHTGEKPFACPQCPHRSATSGNLYLHLATHTSEKPFKCDRCPYRATTKRLFQSHTLRHLGEKPFKCQVCSYACLSATVLRKHMKIHSRDRRFVCYHCGAAFYELPNLRVHMRCHTVGKPYSCASCDFKCSMPKSLQRHKLTHTGEKPSSCDDCSYVSATKSQLLTHKRCHTGEKPFVCHLCDYTFSHATSLKYHLLVHSGVKQFACSDCSYVTTRAGHLKSHMFTHSKEKPYACSKCDFRCKSSIGWKRHQRKHSRLRPFKCNDCPVACFDKFSLVRHIRIHTGEKPYKCDQCDFSTAFSHSLKVHLKRHAGLKEHACDECSFKCVTPEGLRAHQQIHSLDKPLSCDQCEYKCTQLRSLTAHKRTHSVTRPYSCTKCDFTSAHPGSLTQHMKRHYAIKSYTCKLCSYSTNRANQFAVHKSEHTGEKPHACDQCGFKSNHVSSLKFHKRSHTGDTNSRKDSRGRGNVPVQRLLSRISG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -