Ccil001158.1
Basic Information
- Insect
- Corythucha ciliata
- Gene Symbol
- -
- Assembly
- GCA_038030265.1
- Location
- CM075937.1:7866477-7872195[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.6e-06 0.00089 20.8 0.7 1 21 40 60 40 61 0.94 2 11 0.00049 0.094 14.4 0.2 1 23 69 92 69 92 0.94 3 11 0.00043 0.083 14.6 2.0 1 22 103 124 103 124 0.93 4 11 0.00023 0.044 15.5 0.3 3 23 134 155 132 155 0.91 5 11 0.00013 0.025 16.2 0.4 1 20 173 192 173 194 0.93 6 11 2.8e-05 0.0053 18.4 0.2 1 23 202 225 202 225 0.93 7 11 1.6e-05 0.0031 19.1 2.5 1 21 251 271 251 272 0.96 8 11 3e-05 0.0057 18.2 0.3 2 23 281 303 280 303 0.96 9 11 0.063 12 7.8 4.9 1 23 335 358 335 361 0.91 10 11 1.1e-05 0.0021 19.6 0.2 2 21 372 391 371 392 0.94 11 11 0.012 2.4 10.0 3.1 1 23 400 423 400 423 0.94
Sequence Information
- Coding Sequence
- ATGCCGTGCGTCTACAGGGCGCGTTACATAAATAATTTGAAGCATCACGTGTACATCATGCATAATCAGGATAGACATCATCGTTTTGGATACGCCGCTGCCACACCGTCCAAACCGTTCGCATGCAGCAAATGCTTCAGAAGTTATTCCAACCAGGGGAATTTAAAGCGTCATATGACGGTTGAGTGCGGCCAACCGCCTCGATTCGCCTGCTCCAAATGTCCGTACAAGGCGAAAAGAAAGGACAATTTATTAAGTCACGTTATTGTTGTACATGGGCGGTCTCACCACCCTCCTGACAAGAATTTCAGGTGCATAAAATGCTCCAAGACGTACACCAGTCGAAGCACCTTGATGCGTCACACGAGGAGCGAGTGCGGACAGACGCCGAGTCTCGCCTGCCCCGTGTGTCCGTACATGGCGAAACGCAAGGATCATTTGACCAGTCACATGGGATTGAAACACGGCATGAGACTTGCGCCgatccGTCAGTCGTCACCAACGTCAAAAGGCCTTTTCAACTGCGTCACATGCGGTCGAACTTACCAGAATAAAAGTTCACTCATTCGACATAAGTCGGTCGAGTGCGGTCAAATCGCCAGATATCAATGTCCCGACTGTCCCTATAGGGCCAAGCGTAAGGATCAATTAAAGGTGCACGTTGGCATTCGTCATAAAAAGATGATGGCGCCGAGCGCGTTGGAGGAGGCTTCGAACTATTTCTTGTGCGAAAACGGTTGGGTTAAAATGTACCAGTGCGACCAGTGTCATCGCACGTACCGAAGGCGAGACAGTTTGGCGCGCCACAGAAATTTCGAATGCGGTCAAACGCCTCGTCTCTCCTGTCCCTACTGTCCTTTCAAATCAAAACGAAAGGACAATTTGATCGCTCACGCTCGAATTAAACATCAAGTGTCGATGACCTATCAATATATTATAACTTACAAAACCCAGGGAGGCCTGTACACTCACGTCACCTACGAATGTAACAAAGTCCCGCAATTCTCCTGTAAATTTTGTACTTACAGGACACATAGAAAAGGATCACTTAAAAAGCACGCTTATCTCAAACATATGAAAACTGAGTTTTatCAATTCAGAGCTTCCCTATTAAAGTGTCCCGACTGTCCCAAAGAGTACAAAACAAAGGGTGGCCTTCGCAACCATCTGAAGTACGAGTGTAATAAACCGCCTCAGTTTGCCTGCGATCTTTGTCCGTACAAAAGCTATCAGAAAGTTCATTTGAGGCAGCACAGATTTATGAAACACGTCCCGGGGTTTACAACCGCTTTATTGGattag
- Protein Sequence
- MPCVYRARYINNLKHHVYIMHNQDRHHRFGYAAATPSKPFACSKCFRSYSNQGNLKRHMTVECGQPPRFACSKCPYKAKRKDNLLSHVIVVHGRSHHPPDKNFRCIKCSKTYTSRSTLMRHTRSECGQTPSLACPVCPYMAKRKDHLTSHMGLKHGMRLAPIRQSSPTSKGLFNCVTCGRTYQNKSSLIRHKSVECGQIARYQCPDCPYRAKRKDQLKVHVGIRHKKMMAPSALEEASNYFLCENGWVKMYQCDQCHRTYRRRDSLARHRNFECGQTPRLSCPYCPFKSKRKDNLIAHARIKHQVSMTYQYIITYKTQGGLYTHVTYECNKVPQFSCKFCTYRTHRKGSLKKHAYLKHMKTEFYQFRASLLKCPDCPKEYKTKGGLRNHLKYECNKPPQFACDLCPYKSYQKVHLRQHRFMKHVPGFTTALLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -