Ccil012891.1
Basic Information
- Insect
- Corythucha ciliata
- Gene Symbol
- -
- Assembly
- GCA_038030265.1
- Location
- CM075939.1:8005585-8010525[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.5 4.8e+02 2.8 0.8 1 22 326 347 326 349 0.75 2 13 0.38 73 5.3 0.2 2 23 391 413 391 413 0.94 3 13 2.3e-05 0.0044 18.6 0.6 2 23 416 437 415 437 0.96 4 13 5e-06 0.00097 20.7 2.4 1 23 443 465 443 465 0.97 5 13 1.1e-06 0.00021 22.8 2.3 2 23 472 494 471 494 0.96 6 13 0.00093 0.18 13.5 0.3 5 23 507 525 506 525 0.97 7 13 8.8e-05 0.017 16.8 1.3 2 23 531 553 530 553 0.97 8 13 0.00056 0.11 14.2 0.1 2 23 570 590 569 590 0.96 9 13 0.0045 0.87 11.4 0.7 5 20 600 615 598 618 0.88 10 13 5.1e-06 0.00098 20.7 0.4 1 23 626 648 626 648 0.99 11 13 0.00021 0.041 15.6 5.7 1 23 654 676 654 676 0.97 12 13 5.4e-07 0.0001 23.7 1.9 1 23 682 704 682 704 0.99 13 13 0.00064 0.12 14.1 9.5 1 23 710 732 710 733 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCACTAGTCGCCTGTCCCGTGTGCACCCTCTATCTGAGGGAAGGCATGTCGATGAGCAGCCACTTGGAAACACACCCGAAAGACCAAGTTATCGGCGCCCTCATACGATGCATGAACCCCGAGCGAGTGCCCGTATCGGCTTCGGCAACCCCAACGCCGACGATAATCAACCCGTTTCAAGTCGTGTCCGAAGAGCACGTCATATTCGGTCGCCACGAAGTGACAAACATTATACACGCTCCGTTGATGTCCTATCCGATTTATCATCAGCAACAGGGCGTGGTGACGGGCAGTTCGGCTCCCGATTATTTGCAAAGCCCACCCAATGAGCATCGGTACCATGAGTTGCAAATGGCGGTTGCACCGTTCCCTTCTCAAGGTGACGACCAACGACCAAATCAAAACGATGAAATTATCACGTCAGTAATCAACGTACCGCCGACCAATCATTCAAACGTATACCCCTCTGATGAGACTGTACCATCCCAGGGTGACGACAAACCCTGCTACGAAGAAAGAGGCGACAACTATGATGACCCCAAAGAAGAGATAATGAATAATTACAATGGAGGCAACACGCCGTCGCACTCTCCACTGAGCTGCCACTCGGGTATTACGGTGCGAACTGATCTGACGAGTCAGGACCGAGAGCCCGAGGAGTTTGGAACGACCGACTTTCAAGATGAGGACGCTAGACATCACGAAGATTTAATGGACACGCCGTCACGCTATCACGAGGATGTCGACGATCCAATCGGTGACTCTAAGCCGCACCAAGAGGACGAGGAACTGGTGGATGACGTTGAAGCTAGAAGTGACTCTGGTTTGCACAACATTCAGGCGGATGAGTGTCTTCCACCGTTGGGTGAACTTTCGGGGCACGGGAGCATTACGGCTGGACATCCATGGCAAGAAGAGATGTTGTTGAATGTCCCTGGGTCGAGATGGACTCAAGTAGAACCGCGGCGATTCAAGTGTCTTTACTGCGACGTTGAATTTGGTTGTCCCAAAGAGAGGCGAGTCCACGTCGCGTCTGCTCATTGCGCTTCAGGGGACACGAAGGACGGGATCAGTGACAGCGTTGTTTGTATCAGCTGCGGCCTTCAATTGCCATCGAAAGAACTCttgGATCACGTTAAAAACGCCCATAAAAAAGTCGCTCGAACGTGCATGGTCTGCCAGGATGAGTTTAAAACTCTCGCCGAGTTTAATGAACACGTTCAAAATGTACACCCGCTCGAGTGCCGCACTTGTGGGAAAACTTTTACGTCGAAGAATGGCCTACTGACCCATGCGAAAATCCATCTTGACATGAAGCCTCATCAGTGTACGCTGTGCCCTAAAAGTTTTATAACGAAACAAAAACTGAAGGAACATATGAATGGGCACACGGGCTTCTGTCCTATTCAGTGCAATATGTGTGACAAGAAGTTTAGAAGGTATTCCAATTTGAAACAGCATAAAAATAGCGTACATTTTCAGCTGAAAAAGCCGACTAAAGAATTTTTCTGCGAATGCGGCGAAACTTTTATTTCGAAGAAAAAACTCGCCTGGCATCAGGAGACCCACGCGGACAAGCCCAAACAGTGCATGTACTGCAGCGAGCGTTACGTTCACGCTGCGAGTCTCACGCGACACATTCGAAAAGCCCACAATCACGAGTACCTGCCCGCAACGGATGGTGCCAAAAAGAAAAACGTCGTCTGCCCCGTGTGCAATATGGTTTTCGTTGAGTCTTCACTTCGGTCTCATATGAAACAACACGGACAGATAAAACAGTTCGGTTGCATCGTCTGCGGCAAAAGGTTCTACACCAAGTGGAATTTGAATTTACACAGATGGACACACGCGTCGCGCATGTCCAAACCGTACAAGTGTACCTTGTGTAAAAGTGCTTTCATTCGTCAAGTCGATCTGCAGGCTCATATTCGATCCCACTGCAACAGCAAGCCATTTACGTGCAATCACTGCGGAATGCAATTCAATCGTAAACACAATTGGTCCAGGCATGAAAAGGAGCACTTGACAGAGAAAAAGTACACGTGCAACGAGTGCGGCAAAAGTTTCCACAGAAATTACTACCTCGCTGAACACGTGCGGATACACAGTGGAGCCAAGCCCTACACGTGTCACATATGTAATAAAACGTCAACAACTAAGTCGAATCATAATAAACACATTAAAACTCACCACGCGAGGGAAGCCATCAACATCGAGTCTTAA
- Protein Sequence
- MEALVACPVCTLYLREGMSMSSHLETHPKDQVIGALIRCMNPERVPVSASATPTPTIINPFQVVSEEHVIFGRHEVTNIIHAPLMSYPIYHQQQGVVTGSSAPDYLQSPPNEHRYHELQMAVAPFPSQGDDQRPNQNDEIITSVINVPPTNHSNVYPSDETVPSQGDDKPCYEERGDNYDDPKEEIMNNYNGGNTPSHSPLSCHSGITVRTDLTSQDREPEEFGTTDFQDEDARHHEDLMDTPSRYHEDVDDPIGDSKPHQEDEELVDDVEARSDSGLHNIQADECLPPLGELSGHGSITAGHPWQEEMLLNVPGSRWTQVEPRRFKCLYCDVEFGCPKERRVHVASAHCASGDTKDGISDSVVCISCGLQLPSKELLDHVKNAHKKVARTCMVCQDEFKTLAEFNEHVQNVHPLECRTCGKTFTSKNGLLTHAKIHLDMKPHQCTLCPKSFITKQKLKEHMNGHTGFCPIQCNMCDKKFRRYSNLKQHKNSVHFQLKKPTKEFFCECGETFISKKKLAWHQETHADKPKQCMYCSERYVHAASLTRHIRKAHNHEYLPATDGAKKKNVVCPVCNMVFVESSLRSHMKQHGQIKQFGCIVCGKRFYTKWNLNLHRWTHASRMSKPYKCTLCKSAFIRQVDLQAHIRSHCNSKPFTCNHCGMQFNRKHNWSRHEKEHLTEKKYTCNECGKSFHRNYYLAEHVRIHSGAKPYTCHICNKTSTTKSNHNKHIKTHHAREAINIES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -