Basic Information

Insect: Corythucha ciliata
Gene Symbol: -
Assembly: GCA_038030265.1
Location: CM075938.1:53378497-53387660[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 7e-07 0.00013 23.4 1.1 1 23 130 152 130 152 0.98

2 14 3.8e-05 0.0074 17.9 0.3 1 23 157 179 157 179 0.97

3 14 0.00044 0.086 14.6 0.0 1 23 275 297 275 297 0.98

4 14 0.082 16 7.4 0.2 2 23 304 326 303 326 0.96

5 14 0.029 5.6 8.8 0.7 1 23 364 386 364 386 0.94

6 14 0.055 11 8.0 0.0 1 23 393 416 393 416 0.93

7 14 0.02 3.9 9.3 1.4 1 23 419 441 419 441 0.96

8 14 3e-06 0.00057 21.4 1.5 2 23 447 468 447 468 0.98

9 14 0.24 45 6.0 0.0 2 23 475 498 474 498 0.93

10 14 2.5e-06 0.00048 21.6 0.7 1 23 506 528 506 528 0.98

11 14 0.001 0.19 13.4 0.3 1 23 534 556 534 556 0.98

12 14 4.9e-05 0.0095 17.6 0.3 1 23 562 584 562 585 0.96

13 14 5.4e-05 0.01 17.4 0.4 1 23 597 619 597 619 0.94

14 14 0.0018 0.34 12.7 0.3 1 20 1008 1027 1008 1030 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	7e-07	0.00013	23.4	1.1	1	23	130	152	130	152	0.98
2	14	3.8e-05	0.0074	17.9	0.3	1	23	157	179	157	179	0.97
3	14	0.00044	0.086	14.6	0.0	1	23	275	297	275	297	0.98
4	14	0.082	16	7.4	0.2	2	23	304	326	303	326	0.96
5	14	0.029	5.6	8.8	0.7	1	23	364	386	364	386	0.94
6	14	0.055	11	8.0	0.0	1	23	393	416	393	416	0.93
7	14	0.02	3.9	9.3	1.4	1	23	419	441	419	441	0.96
8	14	3e-06	0.00057	21.4	1.5	2	23	447	468	447	468	0.98
9	14	0.24	45	6.0	0.0	2	23	475	498	474	498	0.93
10	14	2.5e-06	0.00048	21.6	0.7	1	23	506	528	506	528	0.98
11	14	0.001	0.19	13.4	0.3	1	23	534	556	534	556	0.98
12	14	4.9e-05	0.0095	17.6	0.3	1	23	562	584	562	585	0.96
13	14	5.4e-05	0.01	17.4	0.4	1	23	597	619	597	619	0.94
14	14	0.0018	0.34	12.7	0.3	1	20	1008	1027	1008	1030	0.91

Sequence Information

Coding Sequence: atggcaaattccgtCGTTAGCGGAAGTTCGGACGAAGCCTACGGATTCAATCTTGCCTGGATTGAGGAAGGTTCAGGCATGGACGAGGAGATATGTGGAGTCGACAAGGACTGCATTGTAGTCCCGTCGTCACCGACTTTGCCCAAAATGGAACAGATGAGCAATAATCATTACATAGAAATTCAGGTTACTGAGGAAGAAGTAGTCACTGATGATCACTGGGATGTGCAGAATGGcTTCCTCGACTTCAGAGAAACCGCCGACGTGGATGTATCAACATCTTCAGGCGGTGGAATGGGCGTCGACGACGTTCTCGAACCTCTAAGCACTGAGCACATGGAGCACATTGGCGACGACGATCTGAACGAATACTCCCAACTTCATCCTTTCTCCTGTGATTTCTGTCCGAGAAGTTTTATGCGCAAAAGCTCGTTGACGGCTCACATACAGACTCACGCTCAGCGCTCGCACGAGTGTAACATGTGCGACGCCGCCTATGACAACAAAGACGACCTGACGGAGCATATGAAAGCTCACGCGTTTCCCGTCAACGGGTCGGGATATGACAGTTACAATTTTGGGCAGACTGTGTGTAAGGTGAAATCGAagagtaaaaagaaaaagaagaaaaaacaaacgtccGAACATTATTCAGCTGGTCAAGCGTTGAATAACATTTATACCTCTCACGGTCATGAGGCGAAGATCAAGATTGAATACGATGATGATAACGTGACCGTTGAAACTGAACTTCAAAATGATTTGGAGGATTTGGTCCGTTCGAAAGCTCCAAAATTCCCCGTGACCGACCCTTCGAGGCCTTACGTATGTCAACGCTGCGGCGTTGGTTTTGCGAGGGAAAAAGCTCTCGTCTCGCATCAACTCATTCACGATGGTGACTCGGCCGTCGAGTGCCCCCGTTGTCGCGACGTCTTTCAGTCTGAAACGGATTTGGCCGAGCACCGTCGCAAAGAACACGGTCAACGATCGTCGGGAGGGCCTTCTGTCAAAGTGAAACCATCCTACCGGGACGTTGACGTTGATGATTGCAAGCTGACGGTAATCAAGCAAGAGCCGTTCGGTGAAGGATTCACGTGCCATATGTGCAACGTTGTTTTTGAAACAGTCGACGAAATTTTGAGCCATAAAGAGCAGCACGATAGTGACTTGGGAGTTCACGCATGCCCTTTGTGCCCTGACGTGTACGATCAACTGGCTGAACTGAATGAACACATTAATGCCTCTCATTCTAAGCACGCTTGTAGCGTATGCCGCACTTTATTTAAAGATCAACTCTCTTTAGACCGTCATTTGTTGAGTCATACGCAGGAGAAGGCAAAGTGTAACGTGTGTGGGAGAAAGTTTTACACGAAGATCGCTCTGAAACGGCACATGAGTAGCCACGAGGACAAGCCGTCCATAGTTTGTGTAGACTGCGGCGCTGTGGATTTTCCCGACGGTTCGTCGCTGTTGAGACACCGTCAGACGGATCACGGCGTCAACTTGACGCGCCTGTTTCCCTGTTTCGAGTGTGGGAAGACGTTCAACTCACGGTCGTCGCAACAGATACATATCAGGATACACACGGGCGAACGACCGTACTCGTGCCGATTTTGTTGGAAAGCTTTCGGAGACGGTGGAACTCTAAGGAAACACGAGAGGATTCATACGGGCGAGAAGCCGTACGTTTGCCCCGTTTGTTCAAAGGCTTTCAACCAAAGGGTGGTTCTTCGGGAGCACGTTCGAGCTCATCACTCTGGTAGCGAGGGGCGAATCGGTGAAGGTTGCTACGAGTGTCTGGTCTGCGGCCAGACGTTCAACTCTTCCACTGACCTGTGCGCTCATTTAGTCGGACATTCCGACGAGAATACAGCCAAACACCGACTGCCTTCGTCTAATCAACCGAGAAAACGGAAACCCACGTCGTCGGCGTCAGCCGCtaacaacaaaaaactcgccCAATTGGTCGCTCAACTCCCTCAGACGACCATTACACCCTCGACGACAATATCTTCCTATAATCCTTCTAGAACTTCACCCATTCAGTACCGGCCTGGTGAAATACAATTTGTTTATTCGCCGCCTAAGAAAAAGTCTTCTCCCATCAAACTGCTGAACAACGGCAGCAACATTAGTTCTCTAGTCAGTGACTTTATGGACTTTGGAGAAGACCACAACATGAACTTGGACGACTTTGACGATATCATCGAAGACGCGACCGACGTTCTCAGGGCAGCATCGTGTGGTGCTAGTCCTAGCTCCAGTCGCACGAACAACACGTATAATTTATACAGCAATAGTAAGAAGGCGGCGAGAATCGTTCGTTCTGGACACAAAGGTTTTCACAAGGGTCAAAATAAACGATTTGTAACCAAGAAAGAGAGTAAAAATTCCACTAAAGTGCGACCCGTGAGCAACGGCGTAAGCTACGCGAGTCGTTACGCCGTCAGTCAGCCCGAACATGACGCTCTTCCTTTGGCAAGTGGTAGCGCTGATCACCAAGAGCTCGTCGCCGAATCAGCCGAAGCCCTCGAGTGGCGAAGTCGCCCTCGTACGAAAAACGTTTCCTATCATCAGTTGAAAATCGAACCGAAATACGAGCGAGCCACATTTCCCTCGAGCTCGGCCGAAGAGGCGCCACCTCCTCCGTCTAAGAAGTCGAAAAGTACGAAGAAGAAATCAAAGAGGAAATCAGGAGCTAAGCTCGCTAAAATTGCCGTAATAGTCGAAGAGCCCATCATTCACGAGACGATCATAGCCAAATCTGAAACCGATTTACTGTTGGAACCCGAATACATGAATGGAATAGACGAAGTTACAACGGTCGCGTCGCCCGGTTTAATGGATGAATCCATCGAACCGTTGGAGCGCGTTGAAACAATTGAAACGTGCATCGTTCAGGATGACTTCGACATTGACGATTTGAATCATCATCTGGTGAGTAGTGTGACCAACGGTGTTGTCGCTGGTTCAGACGACGAAGACGACTCCGAGACTTTGTCATGGTCACGACCCGGGGAATTTGCCTGCGACATGTGCCACCTCGTCTTTCCCTCGTATGAAGACCTATCGAAGCACATACCTATGCATATTTAG
Protein Sequence: MANSVVSGSSDEAYGFNLAWIEEGSGMDEEICGVDKDCIVVPSSPTLPKMEQMSNNHYIEIQVTEEEVVTDDHWDVQNGFLDFRETADVDVSTSSGGGMGVDDVLEPLSTEHMEHIGDDDLNEYSQLHPFSCDFCPRSFMRKSSLTAHIQTHAQRSHECNMCDAAYDNKDDLTEHMKAHAFPVNGSGYDSYNFGQTVCKVKSKSKKKKKKKQTSEHYSAGQALNNIYTSHGHEAKIKIEYDDDNVTVETELQNDLEDLVRSKAPKFPVTDPSRPYVCQRCGVGFAREKALVSHQLIHDGDSAVECPRCRDVFQSETDLAEHRRKEHGQRSSGGPSVKVKPSYRDVDVDDCKLTVIKQEPFGEGFTCHMCNVVFETVDEILSHKEQHDSDLGVHACPLCPDVYDQLAELNEHINASHSKHACSVCRTLFKDQLSLDRHLLSHTQEKAKCNVCGRKFYTKIALKRHMSSHEDKPSIVCVDCGAVDFPDGSSLLRHRQTDHGVNLTRLFPCFECGKTFNSRSSQQIHIRIHTGERPYSCRFCWKAFGDGGTLRKHERIHTGEKPYVCPVCSKAFNQRVVLREHVRAHHSGSEGRIGEGCYECLVCGQTFNSSTDLCAHLVGHSDENTAKHRLPSSNQPRKRKPTSSASAANNKKLAQLVAQLPQTTITPSTTISSYNPSRTSPIQYRPGEIQFVYSPPKKKSSPIKLLNNGSNISSLVSDFMDFGEDHNMNLDDFDDIIEDATDVLRAASCGASPSSSRTNNTYNLYSNSKKAARIVRSGHKGFHKGQNKRFVTKKESKNSTKVRPVSNGVSYASRYAVSQPEHDALPLASGSADHQELVAESAEALEWRSRPRTKNVSYHQLKIEPKYERATFPSSSAEEAPPPPSKKSKSTKKKSKRKSGAKLAKIAVIVEEPIIHETIIAKSETDLLLEPEYMNGIDEVTTVASPGLMDESIEPLERVETIETCIVQDDFDIDDLNHHLVSSVTNGVVAGSDDEDDSETLSWSRPGEFACDMCHLVFPSYEDLSKHIPMHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -