Ccil031134.1
Basic Information
- Insect
- Corythucha ciliata
- Gene Symbol
- -
- Assembly
- GCA_038030265.1
- Location
- CM075942.1:49974360-49986009[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 4e-05 0.0078 17.8 2.0 1 23 199 221 199 221 0.96 2 31 2.7e-05 0.0051 18.4 1.2 1 23 233 255 233 255 0.98 3 31 0.00033 0.063 15.0 0.9 1 23 276 299 276 299 0.97 4 31 0.00046 0.089 14.5 0.7 2 23 306 328 305 328 0.96 5 31 0.33 64 5.5 0.5 1 23 417 441 417 441 0.94 6 31 0.00078 0.15 13.8 1.3 1 23 472 495 472 495 0.95 7 31 0.57 1.1e+02 4.8 3.6 3 23 503 524 502 524 0.96 8 31 5 9.7e+02 1.8 1.5 1 23 534 556 534 556 0.96 9 31 0.00046 0.089 14.5 1.4 2 23 597 619 597 619 0.96 10 31 7.4 1.4e+03 1.3 0.6 1 23 637 660 637 660 0.88 11 31 0.18 35 6.4 0.8 2 23 667 690 666 691 0.84 12 31 0.0073 1.4 10.7 0.1 2 23 700 722 700 722 0.95 13 31 0.00098 0.19 13.5 0.4 1 23 728 751 728 751 0.96 14 31 8.3e-05 0.016 16.9 0.9 1 23 759 781 759 781 0.98 15 31 0.0013 0.25 13.1 0.6 2 23 842 864 841 864 0.95 16 31 0.022 4.3 9.2 1.7 2 23 871 892 870 893 0.94 17 31 0.02 3.8 9.4 3.9 1 20 923 942 923 944 0.93 18 31 8.7e-05 0.017 16.8 1.4 1 23 963 986 963 986 0.97 19 31 0.022 4.2 9.2 0.9 1 23 989 1012 989 1012 0.97 20 31 7.8 1.5e+03 1.2 0.5 4 23 1021 1042 1019 1042 0.84 21 31 0.0083 1.6 10.6 2.7 1 23 1049 1072 1049 1072 0.96 22 31 0.29 56 5.7 0.9 1 23 1078 1101 1078 1101 0.94 23 31 0.0011 0.22 13.3 1.1 2 23 1110 1131 1110 1131 0.97 24 31 0.03 5.9 8.8 1.1 2 23 1137 1158 1137 1158 0.97 25 31 0.026 4.9 9.0 0.5 2 23 1218 1240 1217 1240 0.95 26 31 0.054 10 8.0 0.4 2 23 1306 1328 1305 1328 0.95 27 31 0.72 1.4e+02 4.5 0.4 2 23 1369 1390 1368 1390 0.94 28 31 0.76 1.5e+02 4.4 3.3 1 23 1402 1425 1402 1425 0.97 29 31 0.0055 1.1 11.1 0.0 2 23 1456 1477 1455 1477 0.96 30 31 0.00018 0.036 15.8 0.5 1 23 1483 1506 1483 1506 0.92 31 31 0.014 2.8 9.8 0.1 1 21 1511 1531 1511 1532 0.94
Sequence Information
- Coding Sequence
- ATGACCCAACAAACGAGCCCGAGTTACGAGGACTTGTGCCGCCTCTGCGCCTCCTACGACGCCATCAAAATGGACATATTCAGCGAGAGCGGCCGCGAAAGAAAACTCGCCGACAAAATAACCACATGCCTGCCATTCGGAGTCTCTGAAGATGACATCTACCCGAAGTCTCTGTGTTTTCGTTGTATTTATAACCTTGAAAATTTCTACGATTTTCGTCGCGGTTGTATCGACGCACGAGGAAAACTCGAACGAGTTCACAGAGAGactcaagccaaaaacaacgcctGCCCGGTCACTCCAAAGCCACCACGCGGCAACATTGAATTGCCCCAGCTTAATCCGAAAGTGGAGCCTTCGGTACAAATCAAACAAGAAGAAGTAGACGACGACGTCGAAATGATACCATCGGACTGCGAGGAGGAGGAAGAACATCCCAATCCGGCTGATTTTCTCGAAGCGTGTCTCGGTGAACCACCTCATTGCAGCTATGGAGGTGGTGGTGGATCCGGAACTGGTGGCGGAGGAGGTGGTGGAGGCGGCGGTGGCATGGTTCACGGAGGCGTCCGTATGTTGGATGATGAACAAGGGCCGTTCACTTGTAGAACCTGCGGCCGCATGTTCAACTCGAAGAGCTCTTTGACTATACACGCAAAATTTCACCAGGAAAAATCCCGCGAATCCGAACGGGAGGCGTACTCGTGTTTCGTCTGCGAAAAGGTTTTCTCCAGCAAGGGGCACTTGGCACTTCATTCGAGGGTGCACATCGGTGAAACGGGTCCTCCGATGCCGTCAAATCGTCCTAGTCCAGCGCCGTTCAAacTGTACCGTTGTGACTTATGCAATAAGTCTTACTCTATGGCGAAACATCTCTGGGGGCACGTCAGCACAGTGCATAAAGGTGATCCATTGGTCACGTGCTCTTTGTGTCTACGGACGTTTTCGTCCATTTCTAATTTGGAAGATCATAAAAGAGTAAAACACAAGGATGACCCTAGCGTTCAAGCGCGAAACGGTCAGCAAGATCCGATTTCGGCGTCGGAGCCTCACTCGCCTCGAATGTTCGAAGGAGGGTCGCCTCCGAATCGAAGAAAAAATTCGACTCCGAGAAAAATCAAAAGAGACGACAGTGGTTCGTTCAACTCGGACGATAACGCCAGGGGTGACGCTGATGACACCGAGGAAGGTGGTGGTGGCGCCGGAGGAGGAGGAGCTGGAGCGAATCCACCGGGTGGCCCCCCTATGGTGTACTCGTGTCTTGTGTGCGGGCACAGAAAGTTTAGCGACACTCAAGCTCTGAGCGACCATTTAGCCAACGACCACGGCTATAACGATTTAATCGATTTTGAGAGCGTCAAACGGGAGTACGGTGAAAATGAGTACCTGGAGAACATGATGGAGGCTGAAACCGTGTTCTGTTGCGAAATTTGTTACCGCGAATTTAACGATCGCGCGAGCCTGTGGCTTCACATGCTCTATTCACACCGTGACGAAGCGTCCAAAGCGTGCGGTATTTGCCTCAAAATATGCCAGGACAATGAAAGTTTGACTCATCACGTTGAAACCTGTCACCCGAGAAATAAAACTGAACAGCGACGGTACAGTTGTCAAGTATGCGCTCGACAGCATGATTCGAGGAAAAAACTAGTCACTCACGCTCGAATTCATAAGCTAACCGACTCGTCTGGCAATCTTGTTGATCCTGAGACGGTTGTAGTTTTGAACAGCGAGTTCTATGGAAATGAAAATCAAACGGCGCAGCCACCTGTTGATGACGGCATAATGCCCAGCTGTAATATTTGCTTCAAAGTGTTTGAAACTGACGCAAAGTTGAACAAGCACCGTAGGAGTACCCACCGTGAAGCTTTAGGGTTGAATACGTCCACATCAGGCGGTTATCATTTTTATTTCGCGTGCGAGCTCTGCGGGTTATCTCATCTGTCCAGGTCGGAGCGGTGGAAGCACATGGCGACGTCGCACGCCGGTGATCCGAGCGTCACCTGTGAGTTTAAGGACTGCGGTAAAGTTTTCCCGACGAGCGCCGTGAAAAAAGAACACGAAACGAATCACCACGCCGCCCAGGGACAGTTTCCCAATACTTGTGAAGTGTGCGGGAAAATGTGGAAAACTCGGGTCGAGTATTGGAAACACATGATGGGCGTACACGCTGAGTGTTTGCCCTATATTTGCGGAGTGTGCTTGAAAGTTTTCTGCACTTTGCCTAATTTGGTGAGTCACGTCCGTGAAAGGCACTACCCGCTCATTGGAGGTGATTTTAGTTGTGACATCTGCGGTCGGGCGTATTCGAAAGTGTCGAAGATGACGCGGCACCGGAAAATTCATTATGTTCCGGACACTCCGCCAGAACTGAGGGATTTATTGGAAAATCCTAAAGTCGACAATGAGCCGCATTTTTTGCAACAGCCCAGCGTGTTGACGTGCGATCTCTGTCAAGGCAGCACGGTCGAATACGAGAACCTCGAAACTTTGGGTAAGCACAGACACGAGGCACACGATGTAATGCCCtgcgatttgtgccctaaataCTACGGGAGGACTTCCCATCTTTGGAAACATGTCAATAAAATACACAAGGGTCATCCGGACATCACTTGTCCCCTTTGTCAGCGAACGTCCGCCTCAAAATTACATTTGGCGACTCACGTCGCCAAGCACCACAGAGAGGGCGGTGAGGATGGTGTTGTGCTGGGTGAAGACGGTGACCCATCGTGGAGTACGAGCATCGACGGGGAAATGGGTGAAATGCACACGTGCTCCAAGTGTTCCAAAGTGTTCAGAAAGGAGTCGCTCGTTCGTAAACATTCGAAACATTGTAAAGGACCGCGAATTATGCCCATAGCGATACCTCCGCCTATCAACGGCGTGTACACGTGCGAGCGCTGTTCAAAAACATTCGCCGCTCAGAACCTTTTGTACCGGCACATGAGAAACTCTCATGTCAACTATAAATGTGAGATTTGCGCCGCTTCGGCGAACACCAAAACGGATTTATTCACTCACGTCCGTGAGTGTCACGCCGATCATCCAAACGTTCGCTGCGCGGTGCCGGGCTGTGACAAATTGCTTCGCTGCCGCGCGGATTTGGATCGTCACCAGCGGGATCACCGTCAGAGTGCTCAGTTCCATATTTGTAAGTTCTGCGCAGAGATTTTTACTAGTAAattaaaactcaaaaaacatTTGAAGTCGATTCACGCTAAAGAGACACGATTTCTATGCTATCTGTGTCTCAAAGCCTACACGGCTTTTCACGACTTGAAAAATCACGTAGAAACGGCGCACGCCGCCGCTGTCGACCGTCCGAACGTGTGTCCACTGTGCGCCAAACCGTGTTCAAGCCGTTCAAAATTAATGGATCACCTCAGGTACCACGGCTCGGATTTGAACACTTGTAAACAGTGTATGGCGATTTTTGAAACCAAAGAAGAACTGGAGCATCACATTAATAATCATCCGGGGGAGAGCGGTGACGAGGATTTGGTGGAAGAAGTGAGCGAGCTCGACCCTAATAGCATCATGGACATAATTGGCGCTCCTCAGGGAGGAGTTCGAGTTAAAAGAGAGTTGGACGATGAGGACGGTAATGGCGTTGAGGTTGGGCCAGTggtaaaaaaatcgaaaaagatgTCGAGGTGTCGCGCTTGTTCTCAAATTTTCAGCTCGAGCGCGGACCTTGATAAGCACGTCAAGAGTTACCATCCGTCTAAAAATGAAAGAAGTATTTTAGCAAAGGCGCTGAGCAAGGCGAACAGTGGGTCGAAAGATTCTCTTTCCGATCTTGAGGAAAATGACGACTTCAAGGACCCGTCCTTTTCCCGAAGCTTACCTCCAAACAAATTGAAACAATCGTCGCCTAGAAGTCGCAAAGTGTACtcggacgatttcacgccaagtcgATGCGAAGTTTGTGGCAAAGTCTGGCCGGCTAAGCGTCACCTTTGGCAACACTTGATACGATTCCATCGATCCGAAGCTGGAAAATGCTGTGGGATTTGCCTCAAACTGTGCCCTAGCTATGAAGCGCTCAGCATTCACCTCGCTCAATACCACGCGTCCAGTTTTGACCGTGAGGGCACCAATTTAACCTGCCGCGTGTGTGGAAAGTATCAAAACGCCAAATCGAAACTTCAGAATCATGCTCTCATTCATCCGGATCACATGAAACGAGCTCAAGACTCCGAACATGTTTGTCTTCTCTGTAACGGTGCTTTCACAGAATTTAAAACACTCTGCGAACACTTTCGAACGATCCATAACATCACAGGTGACACTGGCAACGACTCGTCGCCACCGACATCAGCCCCTCAATCGTACAACGGTACAGCTAAAAAGTTACCATTCCTAAGCTGCGACGTCTGTTCCTTAGTGTTTGCCAGTGAAGTCGGCCTGGCGAATCATAAACGAGTTCACGAACACTCGGACAGTTTCAAGTGTGGTCAGTGCGGTGAAATGTTCGCCACGTCCGACGGGTTGAGCAAGCACAAAACTGAGAAACACTCGTCAGCCGATTTTGTTTGCGTCGACTGTAAAGCGAATTTCAGGTCATACACGGAACTCATTAATCACAATCGAGTGTGTCGAGTCAAACGGCCGCTGCCGCCGCCGCCAACGGCCACCACAGCACAGACGGCAGCAACACCCAACAGTGACGATTCAGCTAGTGAAGTGGCTTCGTCTCCTCGAAGTCGCTCGTTGGACGATGAAGAGGACGATGACCTCACAGAAGAAAGTGACGACGATCTATCAGAAACCGACGTCGATAAAAATGAAGCGGTTGAAGAGGATGACGGTGAAAACGACGACTCCTCGTCGTCTTCGTCTTCCTCCTCGAGCAGCAGCAGCAGTAGTAGCGATAGCAGCAGTGAAGATGAAGCCGAAGACGTGGACGAAGAGGCTGACGGTGACGCCGAGGAAGAGGAAGCAGAGGAGGAAGTAGAAGACGCTGACGATGACGATGACACTTCAGAAGCCGAAGAAGTCAAATCTCCCGTGAAAGAAGTTCGGGCAGTTGAGGCTTTCGTGTCAAATGATGACAATATGGTTGAAGTGGTTCAGATTGACCTGATGGACGAATGA
- Protein Sequence
- MTQQTSPSYEDLCRLCASYDAIKMDIFSESGRERKLADKITTCLPFGVSEDDIYPKSLCFRCIYNLENFYDFRRGCIDARGKLERVHRETQAKNNACPVTPKPPRGNIELPQLNPKVEPSVQIKQEEVDDDVEMIPSDCEEEEEHPNPADFLEACLGEPPHCSYGGGGGSGTGGGGGGGGGGGMVHGGVRMLDDEQGPFTCRTCGRMFNSKSSLTIHAKFHQEKSRESEREAYSCFVCEKVFSSKGHLALHSRVHIGETGPPMPSNRPSPAPFKLYRCDLCNKSYSMAKHLWGHVSTVHKGDPLVTCSLCLRTFSSISNLEDHKRVKHKDDPSVQARNGQQDPISASEPHSPRMFEGGSPPNRRKNSTPRKIKRDDSGSFNSDDNARGDADDTEEGGGGAGGGGAGANPPGGPPMVYSCLVCGHRKFSDTQALSDHLANDHGYNDLIDFESVKREYGENEYLENMMEAETVFCCEICYREFNDRASLWLHMLYSHRDEASKACGICLKICQDNESLTHHVETCHPRNKTEQRRYSCQVCARQHDSRKKLVTHARIHKLTDSSGNLVDPETVVVLNSEFYGNENQTAQPPVDDGIMPSCNICFKVFETDAKLNKHRRSTHREALGLNTSTSGGYHFYFACELCGLSHLSRSERWKHMATSHAGDPSVTCEFKDCGKVFPTSAVKKEHETNHHAAQGQFPNTCEVCGKMWKTRVEYWKHMMGVHAECLPYICGVCLKVFCTLPNLVSHVRERHYPLIGGDFSCDICGRAYSKVSKMTRHRKIHYVPDTPPELRDLLENPKVDNEPHFLQQPSVLTCDLCQGSTVEYENLETLGKHRHEAHDVMPCDLCPKYYGRTSHLWKHVNKIHKGHPDITCPLCQRTSASKLHLATHVAKHHREGGEDGVVLGEDGDPSWSTSIDGEMGEMHTCSKCSKVFRKESLVRKHSKHCKGPRIMPIAIPPPINGVYTCERCSKTFAAQNLLYRHMRNSHVNYKCEICAASANTKTDLFTHVRECHADHPNVRCAVPGCDKLLRCRADLDRHQRDHRQSAQFHICKFCAEIFTSKLKLKKHLKSIHAKETRFLCYLCLKAYTAFHDLKNHVETAHAAAVDRPNVCPLCAKPCSSRSKLMDHLRYHGSDLNTCKQCMAIFETKEELEHHINNHPGESGDEDLVEEVSELDPNSIMDIIGAPQGGVRVKRELDDEDGNGVEVGPVVKKSKKMSRCRACSQIFSSSADLDKHVKSYHPSKNERSILAKALSKANSGSKDSLSDLEENDDFKDPSFSRSLPPNKLKQSSPRSRKVYSDDFTPSRCEVCGKVWPAKRHLWQHLIRFHRSEAGKCCGICLKLCPSYEALSIHLAQYHASSFDREGTNLTCRVCGKYQNAKSKLQNHALIHPDHMKRAQDSEHVCLLCNGAFTEFKTLCEHFRTIHNITGDTGNDSSPPTSAPQSYNGTAKKLPFLSCDVCSLVFASEVGLANHKRVHEHSDSFKCGQCGEMFATSDGLSKHKTEKHSSADFVCVDCKANFRSYTELINHNRVCRVKRPLPPPPTATTAQTAATPNSDDSASEVASSPRSRSLDDEEDDDLTEESDDDLSETDVDKNEAVEEDDGENDDSSSSSSSSSSSSSSSSDSSSEDEAEDVDEEADGDAEEEEAEEEVEDADDDDDTSEAEEVKSPVKEVRAVEAFVSNDDNMVEVVQIDLMDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -