Basic Information

Insect: Corythucha ciliata
Gene Symbol: mRpL33_1
Assembly: GCA_038030265.1
Location: CM075937.1:5072459-5082219[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.046 8.9 8.2 2.5 1 19 215 233 215 236 0.88

2 13 2.6e-05 0.0049 18.5 1.3 1 23 329 352 329 352 0.98

3 13 0.0003 0.058 15.1 0.3 3 23 359 379 357 379 0.96

4 13 0.00016 0.03 16.0 2.5 1 19 385 403 385 405 0.97

5 13 1.9e-07 3.7e-05 25.2 1.9 1 23 417 439 417 439 0.97

6 13 0.00031 0.059 15.1 0.0 1 23 450 472 450 472 0.98

7 13 4.4e-06 0.00086 20.8 1.4 1 23 478 500 478 500 0.99

8 13 2.6e-05 0.005 18.4 4.1 1 23 506 528 506 528 0.98

9 13 4e-06 0.00078 21.0 3.0 1 23 534 556 534 556 0.94

10 13 2.6e-05 0.005 18.4 1.2 1 23 572 595 572 595 0.95

11 13 6.5e-07 0.00013 23.5 0.2 1 23 601 623 601 623 0.97

12 13 4.7e-08 9.1e-06 27.1 1.1 1 23 629 651 629 651 0.98

13 13 3e-06 0.00059 21.4 2.0 2 23 658 680 658 680 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.046	8.9	8.2	2.5	1	19	215	233	215	236	0.88
2	13	2.6e-05	0.0049	18.5	1.3	1	23	329	352	329	352	0.98
3	13	0.0003	0.058	15.1	0.3	3	23	359	379	357	379	0.96
4	13	0.00016	0.03	16.0	2.5	1	19	385	403	385	405	0.97
5	13	1.9e-07	3.7e-05	25.2	1.9	1	23	417	439	417	439	0.97
6	13	0.00031	0.059	15.1	0.0	1	23	450	472	450	472	0.98
7	13	4.4e-06	0.00086	20.8	1.4	1	23	478	500	478	500	0.99
8	13	2.6e-05	0.005	18.4	4.1	1	23	506	528	506	528	0.98
9	13	4e-06	0.00078	21.0	3.0	1	23	534	556	534	556	0.94
10	13	2.6e-05	0.005	18.4	1.2	1	23	572	595	572	595	0.95
11	13	6.5e-07	0.00013	23.5	0.2	1	23	601	623	601	623	0.97
12	13	4.7e-08	9.1e-06	27.1	1.1	1	23	629	651	629	651	0.98
13	13	3e-06	0.00059	21.4	2.0	2	23	658	680	658	680	0.96

Sequence Information

Coding Sequence: ATGTTTCTTACGAACGTTCTGCTCAAGAAAAAGGCGAAAAGCAAgTACATCATGGTACTGATGCAGAGCCTCGTAAGTGGTCACCAATTTAATTTGATCCGTGAACGACTGGCCGATAAAATGGAATTGATCAAATTCGATCCTTACATGACCAGTCCGCCGGACAAAGCCGCCGACAAGAAGGCAGCGTCCAAAGCATCCTCGTCACGAAGCTCCGCCTCGACAGTTGACAAAGCGGCGGCTGTCGTCGCTCAAAAAGCGGCCGAAGCGGCTATGACGCCGCGTCGACGAGGTCGCGCGCCTTCTTCATCGTCGAGCACCACCACGACGGATAAGAAACAGGCGGAGAGTGGTCAAGAGAGTAGCCCCGCGGTGTATACTGGTGGAAAGGGGCGGGGAAGGAAAAAAGCTATCGCTCGAGCGAACGATTTGGACAGTGAGGAAACACAGTCGACTGCTTCTGATCCCGTCAAGAACAAGAGAGGCAAGAAGAAAAAACCCGACTCGAAAGAAGATGCGACCAACGATAAAAACGAGATTTCCGCCGAAAAGGCCTCCTCGAGTGAACTCGCGGAGTCGGCCAGTGAACAGGCGGCAACACCGCAAAAGTCAGACGTCGTCGTTCTTCCACCGGTTGAAGTCCACAAGTGCGAGCACTGCCCCAGATTTTTCAGCACTCTCCAGGGGAAAAGAACGCATGAGAGTCGCTGTAAGAGCAATCCGCGAAGGATTGTCACGGAAAAAATCCCCGACAACACCGTCATCGATTTGCCGAACACAAGCGTCGACCCGTCGAAGGTGACAATCAACAAGGAGTTGATGGGCGTGAAAAATGAGTATTATTCATatgatgacgatgatgatgatctAATTGTCGACCCTTTGGGTCAAGATGTGGGGGAGGGTAGCCCTCCTCCACCCATACCTGTCCCTATTTGCCCTTGTTGTGGCGATGACTTTGCGACCGCGCACCAGGAAGGTGAATATCAATGCGGAAACTGCCAGAGTCGTTTTAAAGAGAAGGCGAGTCTACAACGGCACATTAAAACTCTTCACTTGGGCACTGGGCTTGACTGCCCTCAGTGTGGCGTCAAATGCCCAGACAAGGGCACCCTCGCGCGACATCTGTACACCCACACCGGCCTTAAGCCATACTCGTGCAAAGTGTGCAAACAAGAGTTCAGTCGAAAGTATCACCTTGTTAGACATAACACTCAAACTGGATGCGACGGAAAGGCCAAACCGACATTTCCGTGCCTCGTGTGTGGGCGATCTTTCAGCCGGAAAGATAATTTGAGGGATCATTTGCGCCATCATATGGGAGAGACAAAACGGCCGAAAAAGGCGTACATATGTGAGGCGTGCGGAGTCGAATTTCCCGAAGCGAGTGCTCTTCAGGCCCATAGGAAAACCCACGCTGGGGAAAGACACTATTATTGCGATTTTTGCCCTAAGCGTTTCCCATCCAGCGGAGCCATGAAAAAGCACAGGAGAACTCATACGGGGGAAAGGCCGTACGAGTGCCAAACTTGTCATAAATGTTTCGCCGCCAAGGAGACGTTGAATCGTCACGTAAGGATTCACACTGGGCACAAACCCCACGCTTGCAATTACTGCGGTAAACGATTCATTCAGTCCTCGCAGCTTCGCTCTCATCTTTTCTATCACACTGGGGGCACTGCTACTAACACAGTTTTGACTCCGACTGAAACGTTCAGCTGCGAACTGTGTGGCAAGAAATTCAACCGACGCGCCCGTCTGAATGAGCACATCAAATTCCTTCATTTGGGGGCAAAACCGTTCGAATGTGCCCTTTGTCCTAAAACGTTCATTCGAAAAGAGGACTTGAACAGACACATGGTCATTCATTCCGGAGTCAAAGctCACAAGTGCCCTATTTGCGGAAAATCATTCGCGATGAAGTCTTCTCTTAAAGTGCACCTTCTGACCCATACAAAGGAGCCACCACGTTCATGCGACGAGTGCGGCAGGGCTTTCATTCGACAGGACTGCCTTTTGAGGCACATGAGAAACAAACACAGGGACATGCTCGAGGAGATTCGTTCTGAAGCTGAAAAGAAGAAATTGCAGCAGCAACTGCTTCAGGTTGCCGCTGAGGCCAGTCTTGTGGAAGGGCTCGAAGACCGTGAAGAGCTAGACGACAACGGCCTGACTGAAGCCGTCCGCGAGCTTCTCACACTGTTGGTCGACGAGGCGACTCTCAAAGGTCTCGGCTGGCCGACAACAGGCGTCGAAGCTCTTTTAGAAGCTgtgaTCCGGCGCTGCGGTCACGAGCCAGCGCCAGCCTCAACACCTCATCACGACCGTCTTCGGCACAATGTCAAATTGTTGTTTACAGTCGTCATTGACGATTCAGCCGTGAAAGCTCTTCTGAACAATCAGACGGTTGATGAAGTGATACTTCACGTTTTACGTTTAGCGAAATCGTAA
Protein Sequence: MFLTNVLLKKKAKSKYIMVLMQSLVSGHQFNLIRERLADKMELIKFDPYMTSPPDKAADKKAASKASSSRSSASTVDKAAAVVAQKAAEAAMTPRRRGRAPSSSSSTTTTDKKQAESGQESSPAVYTGGKGRGRKKAIARANDLDSEETQSTASDPVKNKRGKKKKPDSKEDATNDKNEISAEKASSSELAESASEQAATPQKSDVVVLPPVEVHKCEHCPRFFSTLQGKRTHESRCKSNPRRIVTEKIPDNTVIDLPNTSVDPSKVTINKELMGVKNEYYSYDDDDDDLIVDPLGQDVGEGSPPPPIPVPICPCCGDDFATAHQEGEYQCGNCQSRFKEKASLQRHIKTLHLGTGLDCPQCGVKCPDKGTLARHLYTHTGLKPYSCKVCKQEFSRKYHLVRHNTQTGCDGKAKPTFPCLVCGRSFSRKDNLRDHLRHHMGETKRPKKAYICEACGVEFPEASALQAHRKTHAGERHYYCDFCPKRFPSSGAMKKHRRTHTGERPYECQTCHKCFAAKETLNRHVRIHTGHKPHACNYCGKRFIQSSQLRSHLFYHTGGTATNTVLTPTETFSCELCGKKFNRRARLNEHIKFLHLGAKPFECALCPKTFIRKEDLNRHMVIHSGVKAHKCPICGKSFAMKSSLKVHLLTHTKEPPRSCDECGRAFIRQDCLLRHMRNKHRDMLEEIRSEAEKKKLQQQLLQVAAEASLVEGLEDREELDDNGLTEAVRELLTLLVDEATLKGLGWPTTGVEALLEAVIRRCGHEPAPASTPHHDRLRHNVKLLFTVVIDDSAVKALLNNQTVDEVILHVLRLAKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -