Ccil037986.1
Basic Information
- Insect
- Corythucha ciliata
- Gene Symbol
- -
- Assembly
- GCA_038030265.1
- Location
- CM075943.1:51677978-51680773[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 1.6 3.1e+02 3.4 2.3 2 23 83 104 83 104 0.96 2 29 0.00013 0.026 16.2 1.1 1 23 110 132 110 132 0.97 3 29 0.0002 0.038 15.7 3.2 1 23 138 160 138 160 0.98 4 29 0.004 0.76 11.6 0.3 1 23 166 188 166 188 0.96 5 29 0.0087 1.7 10.5 3.3 1 23 194 216 194 216 0.97 6 29 0.0041 0.79 11.5 3.6 1 23 222 244 222 244 0.98 7 29 0.0016 0.31 12.8 1.0 1 23 250 272 250 272 0.99 8 29 4.2e-05 0.0082 17.8 0.5 1 23 278 300 278 300 0.99 9 29 8.8e-05 0.017 16.8 0.9 1 23 306 328 306 328 0.99 10 29 3.9e-05 0.0075 17.9 1.1 2 23 335 356 334 356 0.97 11 29 1 1.9e+02 4.0 0.2 1 23 363 385 363 385 0.93 12 29 0.00046 0.089 14.5 0.8 1 23 391 413 391 413 0.97 13 29 0.00065 0.13 14.0 0.9 1 23 419 441 419 441 0.98 14 29 0.0058 1.1 11.0 2.7 1 23 447 469 447 469 0.95 15 29 0.00077 0.15 13.8 1.2 1 23 475 497 475 497 0.98 16 29 0.00075 0.14 13.8 4.5 1 23 503 525 503 525 0.98 17 29 9.3e-05 0.018 16.7 0.6 1 23 531 553 531 553 0.98 18 29 0.0034 0.66 11.8 7.8 1 23 559 581 559 581 0.98 19 29 0.00049 0.094 14.4 1.7 2 23 588 609 587 609 0.97 20 29 0.0055 1.1 11.1 2.6 1 23 620 642 620 642 0.98 21 29 7.4e-05 0.014 17.0 0.7 1 23 648 670 648 670 0.97 22 29 0.002 0.38 12.5 0.1 1 23 676 698 676 698 0.97 23 29 0.0017 0.32 12.7 3.9 1 23 704 726 704 726 0.98 24 29 0.0032 0.62 11.9 0.2 1 23 732 754 732 754 0.98 25 29 0.02 3.9 9.3 2.6 1 23 760 782 760 782 0.96 26 29 1.8 3.5e+02 3.2 2.5 1 23 788 810 788 810 0.98 27 29 1.9 3.6e+02 3.1 1.5 1 23 816 838 816 838 0.97 28 29 0.0056 1.1 11.1 2.7 1 23 844 866 844 866 0.97 29 29 0.013 2.5 9.9 8.5 1 23 871 893 871 893 0.97
Sequence Information
- Coding Sequence
- ATGATTGACGAGGACGATAGTGTGATTCAAATATCGGACTCTTCAAGTTCAGTGGAAGAAGTGCCGTATTTGTTAATGGACGGAACCGAAGTGGAACATTTGGAGGTTGAGCCAACAATCAACGGCGTCGACGAGTCGGACCAGCTTGAACTTCTGATGGACGAGCTCATGACTTTCGACCCTGAGAAGGCTCCGGAAAAGAAGAAAGTGGGACGTCCGCGACGACGGAAACGCGGCAGTATACGTAAGTGCAAACGGTGCCATTACCGGTCCTATTCGGCTCAGTCGATTAAAATTCACGAAATGATTCACACCGGCGAGAAACCGTACGTGTGCTATGAATGCAATTACGCGTGCATCACAAAGTCAACTTTGAAAAGTCATATTGTTGTGCACACGGGGGAAAAACCGTACAAGTGCGATTTGTGTGATTTCAAGTGTTCGAGGCCGACGTCTTTGAAGAATCACGAGAAGATTCATACGAATGACAAGCCCTACCTGTGTGAGTATTGTGACTATTCTACCGCCTATATAAACGCTTTAAGGGTTCACGAAAGGAAACACACGGGTTCAAAGCCCTACAAGTGTGATCAGTGCTCCTACAGGACCGCTCATCAGACCTCGCTAAAACTTCACAAGAATGCCCATACTAGTGATGACCCGTATGTGTGCACATATTGCCGATTTACAACTTCGTCCAGCCACGCGTTCAAAATTCACCAGGCGAAGCATTTCGGACCGAGGAAATACACCTGCTACCATTGCTCCTACGAGGTGGCCTCACTGTCCGTCCTTAGACTGCACATGCGGGTCCACACAGGTGAACGCCCGTATGTGTGCACATTGTGTGACTTTTCAGCAGCTCAGTCAAGTTCCCTCAAGTCCCATCTACGGCGTCACACCGGCGAAAGACCGTACGAGTGCGATCAGTGCGATGCCACATTCCCCTACTTGAACTCTCTGCGGTATCACCAGAAGAAGCACGACAACCCTGAGTCTCTTACGTGCGACTTTTGCAAATTGGAATTTCCGGATAAATCATCACTTAAGAAACACGCTAAAACTCACGGTACTGAGCAGGGTAGGCACGTCTGTGGATTTTGCGGTTATTTAGCCATCAGCGACACTGTTCTTCAAACTCACCTTCGAGTTCACAGCGGGGAAAAGCCGTACAAATGTGAGGTGTGTGGTTTCGCGACCGCCTATCAAGCGTCTTTCAAACGTCACCAATTTCTTCACACCGGCGAAAAACCGTACGTCTGCTCACATTGCGACTACGCGTGCGCCCTTCCTGCCATGTTGAAAAGTCACGAACGGATTCACTTTGTTGTGAAACCATTCGCCTGCCAGACATGTCCGTTCACGTGCAGCAATCCAACGTCGCTACGAAACCACGAATTTCGACACACGGGTGAAAAACCGTTTATATGCGCCCTGTGTGACTACTCATGCGCCATATCGAGCATGATGCGTAGTCACATGAGGACGCACACAGGTGAGAAACCGTTCTCGTGCGATCTTTGTGATTACACTTGTTCACATTTGAGCTCGCTTCGCATTCACGAAAACAAACACAACGGAATTAAACCGTTTTCGTGTACCGAGTGTGACTACGCGTGTATTTCTGCGGCCCTACTCAAAAGTCACGTTCGATCTCATTCGGGCGAGAAACCATTCTCGTGTAAATTGTGCGACTATAAGTGCGCTCATCCGAGCTCGTTGAAACACCACGAGAAAAAACACGAACCGTTCAGCGAATTGGAGTGTAGCCAGTGTGATTTTAAAACCGATTCCAAGCGGTCGCTCAATCGACACATTAAATCGCATTCAGCTCCCTCCAAACCAGAGTCGGACCCCTACGCGTGCGAGCACTGTAACTATAGAACCCATAATTGGCAAGCGATGGTCAATCACCAACGGGTACACACTGGCGAAAAACCATTCGCTTGCACAGAGTGCAGCTACACGACAGCACACGCTAGCGCTCTTCAAATTCACCTGAGGAAGCACACGGGTGAGCGACCGTATGCATGCGATGAGTGCGAATATACCGCGGCGACATCAACGGCTTTAAGAGCCCACAAAAACAAACACTTGGGTGTTAAATCATTCCATTGTTCCTACTGCGAATATTCGACCAACTACCAGCAGGCGCTTCAGTATCACATACGGAAACACACGGGCGAAAAACCCTACAAGTGTGCCTACTGCGAGTACAGAAGTCGTGGACCGTCCGGCCTGAAAGTTCACGAACTCTCACACACCGGTCACCGACCCTACGCCTGTTACCACTGCAACTACCGGTGTGCCTCAATCAGTCTACTAAGAAGTCACGTCGTCATGCACACCGGTGAAAAACCCTACTCGTGTCGTTTCTGTTCCTACAAAGCCGCCCATTTAAATTCGGTCAAAGTTCACGAACGTCGCCACACTGGCGAAAAACCCTATCGCTGCGGCCTGTGCTCCTTCAAATCAGCCTATCCCAACGCCATACACGCCCACAAAAAGAAACATTTCAGCGTTGAACTGTTCGCCTGTAAACTCTGCCAGCACATATGCTCGGGCGCTGACGCTTTCAGGGATCATATGAGACGCCATGTGGACGGTGTCTACCAGTGTTATCACTGTAAGTGTACGTGCGGGAAAAAAAGTGATCTGAGGCGTCACATTGAACTTCACTTGGAAGATGAGACGTTCTCTCCTGTTGACGAAGACGTTAAACCGTTCGTTTGA
- Protein Sequence
- MIDEDDSVIQISDSSSSVEEVPYLLMDGTEVEHLEVEPTINGVDESDQLELLMDELMTFDPEKAPEKKKVGRPRRRKRGSIRKCKRCHYRSYSAQSIKIHEMIHTGEKPYVCYECNYACITKSTLKSHIVVHTGEKPYKCDLCDFKCSRPTSLKNHEKIHTNDKPYLCEYCDYSTAYINALRVHERKHTGSKPYKCDQCSYRTAHQTSLKLHKNAHTSDDPYVCTYCRFTTSSSHAFKIHQAKHFGPRKYTCYHCSYEVASLSVLRLHMRVHTGERPYVCTLCDFSAAQSSSLKSHLRRHTGERPYECDQCDATFPYLNSLRYHQKKHDNPESLTCDFCKLEFPDKSSLKKHAKTHGTEQGRHVCGFCGYLAISDTVLQTHLRVHSGEKPYKCEVCGFATAYQASFKRHQFLHTGEKPYVCSHCDYACALPAMLKSHERIHFVVKPFACQTCPFTCSNPTSLRNHEFRHTGEKPFICALCDYSCAISSMMRSHMRTHTGEKPFSCDLCDYTCSHLSSLRIHENKHNGIKPFSCTECDYACISAALLKSHVRSHSGEKPFSCKLCDYKCAHPSSLKHHEKKHEPFSELECSQCDFKTDSKRSLNRHIKSHSAPSKPESDPYACEHCNYRTHNWQAMVNHQRVHTGEKPFACTECSYTTAHASALQIHLRKHTGERPYACDECEYTAATSTALRAHKNKHLGVKSFHCSYCEYSTNYQQALQYHIRKHTGEKPYKCAYCEYRSRGPSGLKVHELSHTGHRPYACYHCNYRCASISLLRSHVVMHTGEKPYSCRFCSYKAAHLNSVKVHERRHTGEKPYRCGLCSFKSAYPNAIHAHKKKHFSVELFACKLCQHICSGADAFRDHMRRHVDGVYQCYHCKCTCGKKSDLRRHIELHLEDETFSPVDEDVKPFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -