Basic Information

Insect: Corythucha ciliata
Gene Symbol: -
Assembly: GCA_038030265.1
Location: CM075937.1:1956687-1968739[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.3e-07 9.4e-05 23.3 0.0 3 35 14 45 12 54 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.3e-07	9.4e-05	23.3	0.0	3	35	14	45	12	54	0.88

Sequence Information

Coding Sequence: ATGGCTCCGGTTCACAAGAAAAGAGGGCTCTGGACCCAGGCACAACTGGCAGACGCAATAACAGCCATGAATACAGGAATGTCGTCGTACAAAGCTAGTTCGACATTTGGTGTCCCTAGACGCACTCTAAGAAGACTTCGGGAAAAAGGATTAACCGACAAAGCAAAATTGGGGAGAGCCCCAATCATACCTGAATCTGATGAAGCAGAATTGGTACGAAGGATTCATAGGCTTGCTGACGTGGGGATGCCATCAACCGCCAAGTGTTTGAGGAGGTCAGTATTCACATTCGTTAACATGAAAGGTCTGAAACATCCGTTTTCCAGCAATGATTTACTGGCTGGTAGAAAATGGCTTCGTCTTTTTCTGGGACGACATCGTGATATTGCGAGGAGGAAAGCTCAAAACCTCAATCCAGCTCGAGCTCAGAAGTTGAATCGATTCATTATATTCAACATTGATGAGAAGGGGTGTCGCCTAACTCTCCATCACGCCCAGCAAGTTTTGGCAAAGAAAGGAAGACGAAACGTGCATATTATTGCCCCCGAACATGGAGAGAACGTGTCCATAGTCGCATGTGCCAACGCCATAGGGCAGGCTATTCCCCCACTGGTTATCTTCAAGGGACAGCGGCTGCATCCTGACTGGGAGTTAGGCATGCCTGTTGGCTCCAAAATAATCATGACAAAGAAGGGCTCAATGACAACTGTGGCCTTCATCGCTTGGATAGAACACTTTGCAAAGTTCAAGCCAGCTGGAAAAGTGTTGTTGATTTTCGATGGTGCTTCCTCGCATTTGGATGCCAACATCGTTGATGCAGCTGAGGCAAATGACATAATTCTGTACTGCTTACCGAGCAATACCACACATGCACTTCAACCGATGGATGTCTCATGTTTCAAACCATTCGAATCATACTGGGATGATGAAGTGCTGCGCTTCTGGGAGAGGAAGGGTGAtaggaaaatcaccaaacatGTTTTCGGGGAAATTCTCGGCCGCATTTGGCCAAAGGCGATGACTCCATCGAACATTATGTCAGGATTCAGGGCAACGGGGATCTATCCCTTTGACCGGAATGCCGTCAAGCCAGAAATGTTTGCACCAAGTGACATCTCTGAAAACAGACCAGAACCCTCTGAAGCCTCTCCACCATGTGACGACCCACAAAATGATTCAATCCCCACTGAGGCCAATCCAACTTTGCCTTACAGAGCTCATAATGTGGAGGACTTATCCAACTTTCCCGAACTCCCATCTGATGAAGACGATGATGAATGTGTTGATGATCCTGCCAAAGAATCTACACCCATGTTTGCAGTCACCTCCACTCCTGAACAGCCCCCTGTCACCACTGACGAGCCACCTGCGACCAATGTTTCATTTTCGTCAATATTGACCACTCCAACCGTAAAAACGGGCAAGAAGATTCGCAGGAAGGCTATAAATTACAAAGGCGTTCAAGTGACCCGGAGCTTATTTGCTGATGCTGCACCAGTTGCGACTGTCTCAACATCTCCAGAGGTTCCCCCCAAACAACAGAAAAGGAAACAAACGACCTCCAAGACACCCAAACCCtcagagaaaaagaaaaaatccgcTCCGAAGAAGAAGTCTCAACACCACCAACGCAGTGGCATAACAGATCCAGCTCCCGGACCCAGCGGTTTGCAGAAGTCCGTTCCTGCCAAAACCCTGCAGCCTCAGGAGCCGTGGTTTTGTTTCATTTGCCAGGAAGATATCCAAGAGGATATGGCAACCAAGCCTGTGACTAGTTCTATTGCAGTTGACAATCCCACCCAACACGGGTCGACTCAAATGGAATTCGAACAAATTTCGTTTATATCCGAAAATCATGGATTGACAATCGATTGTTTATCGAACGTCCCAATGCCGGATAATTCTTGGGCATTGTCCAGAATTCAAGGCAAAGGGATAATTTACCTTCAATTCAGCTCGGATTTGAGGGAAATTCATAGAAGAATTGTCGTATATGACAATTTTGAAGTCGAGACTGCCAAGCTCATCAGCCGTCATTTAGGTGACTTCGGAGCAGGCGACGCTCGCTTCGTAAAATACACGGACTCCGCTGAATATTTCGCAGGATACGTAACCAAACGAGCGTCCTCATTTACTAATTGCGAGGACTGTAAGCGATGTTTGGTTACGGACGATGGTCATGAAGTGAGCGACTACTTCAAGGAGAGGGATTTACACATGGTGCTTGTGAAACCCAATTTAGAAGTTGTTCGTTTACTTCAGCATCTCGAGGACCACATTACCGCGATTAAAGCCGAGGATCCATTGTGcgccgaaacattttttaaaattatctgGGCCTTGCAGGATTCTTCAAATCCTTTGCCTTTAGTTGGTTGTAACGCGAGAGACCATCGCATGCATATAACCAAACAAATTGTGATGTTCTACGTATGCACAAGAATGCACTTCATGTGTACTTTCGAAAACAAGCATCGCAAAAGTAATATTGAAGCCAAGAACTTGAACAAGCTTGCAAAACTAAAGTGA
Protein Sequence: MAPVHKKRGLWTQAQLADAITAMNTGMSSYKASSTFGVPRRTLRRLREKGLTDKAKLGRAPIIPESDEAELVRRIHRLADVGMPSTAKCLRRSVFTFVNMKGLKHPFSSNDLLAGRKWLRLFLGRHRDIARRKAQNLNPARAQKLNRFIIFNIDEKGCRLTLHHAQQVLAKKGRRNVHIIAPEHGENVSIVACANAIGQAIPPLVIFKGQRLHPDWELGMPVGSKIIMTKKGSMTTVAFIAWIEHFAKFKPAGKVLLIFDGASSHLDANIVDAAEANDIILYCLPSNTTHALQPMDVSCFKPFESYWDDEVLRFWERKGDRKITKHVFGEILGRIWPKAMTPSNIMSGFRATGIYPFDRNAVKPEMFAPSDISENRPEPSEASPPCDDPQNDSIPTEANPTLPYRAHNVEDLSNFPELPSDEDDDECVDDPAKESTPMFAVTSTPEQPPVTTDEPPATNVSFSSILTTPTVKTGKKIRRKAINYKGVQVTRSLFADAAPVATVSTSPEVPPKQQKRKQTTSKTPKPSEKKKKSAPKKKSQHHQRSGITDPAPGPSGLQKSVPAKTLQPQEPWFCFICQEDIQEDMATKPVTSSIAVDNPTQHGSTQMEFEQISFISENHGLTIDCLSNVPMPDNSWALSRIQGKGIIYLQFSSDLREIHRRIVVYDNFEVETAKLISRHLGDFGAGDARFVKYTDSAEYFAGYVTKRASSFTNCEDCKRCLVTDDGHEVSDYFKERDLHMVLVKPNLEVVRLLQHLEDHITAIKAEDPLCAETFFKIIWALQDSSNPLPLVGCNARDHRMHITKQIVMFYVCTRMHFMCTFENKHRKSNIEAKNLNKLAKLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -