Ccil003935.1
Basic Information
- Insect
- Corythucha ciliata
- Gene Symbol
- -
- Assembly
- GCA_038030265.1
- Location
- CM075937.1:39176570-39178654[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-08 3.4e-05 24.7 0.2 3 43 16 55 15 57 0.92
Sequence Information
- Coding Sequence
- ATGCCCCGGAGCAAAAACAATATAAAACGTCCACCGGTCAACCTAGAGGCCTTAACCCGTGCCGTGGCTGAAGTCAAGGGTGGGAGCAGCATCAACTCAACCGCAAAAGCCTATGGAATCAGCCGCAGGACATTACAGAGGCACTCGAAGAAAACTAATTCCACAGAGGAATTCAAGTATGAAAACAATTGTGCTCATAAAAAAATATTCTCCGAACAAGAGGAAAGAGATTTGGTGGATTATCTGTTGCTTTGCAGCAAATTGCTCCATGGATTGACTCTAAAAACGTTCTCGAAATTCGTCCACGACTTTGCTAGCCGAAATGGCAAATCAATCCCTGCAAGTTGGAATCTTTGTGGAGCAGCAGGGCCGCGTTGGATCCGTGATTTCCTGAAACGTCACAATCGCTTGGCTTTACGTAAGCCTCAGCCAACCAGCGTTGGAAGAGCTGCTTGTTTTAACCAACCAGTGGTGGATTCGTTTTTTTCGAACTTGAGTGCTCTCTTTGATAAATATGAGTTCCAACCAGGGGACATCTACAATGTAGATGAAACAGGCCTTTCTACCGTACAAGCACCTCCCAAAATAATCGCCGAGAAAGGAGCCCGAAACGTTGGGGCCATATCATCCGCCGAAAGAGGAACCAATGTCACCTTAATAGCGACAGTCAACGCGTTGGGCAACACCATTCCCCCACTGGTTGTGTTCCCAAGGGTCAGGTTCCAGGATTCCATGCTGATTGGAGCTCCACCAGGCACTATCGGAGTTGCTAATCCATCTGGATGGTCTAATTCAAGCATTTTCATGGAATATATGAGACATTTGGTCAGGAATAGTCGCCCGTCAAAGGAGAAACCCATCCTATTGTTGATGGACAACCACGAGAGTCACCTTTCCGTTGAAGCCATAAATTTCGCCAAAGAGAATGGGGTGGTGATGTTtactttcccccccccccacacgactCATAAACTCCAACCACTGGATcgtggggtctttggccccttcaaaaaacaCTACAATCACCAGATAACGTTGTGGCTACAAAACAATCCAGGGAAACCGATAACCATTCACCACATTTCGTCAATTCTTGGTGCGTCCTTCCATCTTGGTTTCACTCCTGGGAACATCCAGGGTGGCTTTCGCGGCTCAGGGATCTACCCTATCAATCCTTACGTGTTTACTGAGGCCGACTTTTTACCATCCAACCCCACTGATCGTCCTGCTCCTCAACCCGCATGCCCAGCCGATTTGTCAGTGGTTCCAGGTCCGTCCGGCTGTCAGCAAACCAATCATTCGAATTCACAAAGCATGCCAGGCTCTTCTGACTACGTGAGTCCAAAAGAAGTTCGCTCATTACCGAAGGCCCAGGCCCGTGACCCAAAAAAAGGAGGACGCCGTCTTGGTAGGTCGCGAATCCTAACAGACACCCcagaaaaaatggaaattgaagCAGAAGCCTCAGCAAGGAAATCATCTCAACCCAAGCCAAAGCGACGTGAGCTCTTCAAGGCGCCAACTGTCTCTACTGCCAAGAAATCGAAGACACAGAAGAAACCCTCACAATATTCGTCCGAAGAAGATGAGACAGatttggaacTCGACTCTACTTCTGAAAGCGAGCCCGACTTCGATCAAGTGGCAGCTGAAGCTATCAATGATGGCAGCAATGACGTCACAGAATCCTGGGATGAAGAATGCCCCAACAACAACTTGGGAAAGTGGGTCCTGGTGAAATTTTCGTGTCCTAATGGCAACAAGTTTTATGTGGGACAAGTGTTGGTCTTGTACGATAACTCACAAGCTACTGTGAAATTCGCTAGGAAAAGAGGGTCCATATTTGTCTGGCCCACAGTAGAGGACGTGTCTCAAGTTCGAATAAGTGATTTTGAAAAGGTGCTCCCACCACCCAACATTAGAAGAAGGGGCGAAATAACATTTGATCTATCATTTACAGGACTTAACATAATGTAG
- Protein Sequence
- MPRSKNNIKRPPVNLEALTRAVAEVKGGSSINSTAKAYGISRRTLQRHSKKTNSTEEFKYENNCAHKKIFSEQEERDLVDYLLLCSKLLHGLTLKTFSKFVHDFASRNGKSIPASWNLCGAAGPRWIRDFLKRHNRLALRKPQPTSVGRAACFNQPVVDSFFSNLSALFDKYEFQPGDIYNVDETGLSTVQAPPKIIAEKGARNVGAISSAERGTNVTLIATVNALGNTIPPLVVFPRVRFQDSMLIGAPPGTIGVANPSGWSNSSIFMEYMRHLVRNSRPSKEKPILLLMDNHESHLSVEAINFAKENGVVMFTFPPPHTTHKLQPLDRGVFGPFKKHYNHQITLWLQNNPGKPITIHHISSILGASFHLGFTPGNIQGGFRGSGIYPINPYVFTEADFLPSNPTDRPAPQPACPADLSVVPGPSGCQQTNHSNSQSMPGSSDYVSPKEVRSLPKAQARDPKKGGRRLGRSRILTDTPEKMEIEAEASARKSSQPKPKRRELFKAPTVSTAKKSKTQKKPSQYSSEEDETDLELDSTSESEPDFDQVAAEAINDGSNDVTESWDEECPNNNLGKWVLVKFSCPNGNKFYVGQVLVLYDNSQATVKFARKRGSIFVWPTVEDVSQVRISDFEKVLPPPNIRRRGEITFDLSFTGLNIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00372838; iTF_00372829;
- 90% Identity
- iTF_00372838; iTF_00372829;
- 80% Identity
- -