Ccil002804.1
Basic Information
- Insect
- Corythucha ciliata
- Gene Symbol
- -
- Assembly
- GCA_038030265.1
- Location
- CM075937.1:25854734-25855744[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-09 1.9e-06 28.7 0.0 2 39 19 55 18 60 0.91 2 2 5.3 3.7e+03 -1.0 0.0 28 37 120 129 120 131 0.84
Sequence Information
- Coding Sequence
- ATGCCCCGAAATTACACACCAGATCCACGAGGAAGGCGCTATGTGCGGCACCTCCCGGACGTTATTAGTGCTGCAATTTCACTCGTAAAACGAGGTAAATCTATTCGTTATGCAGCTAAGGAATATAATATTCCATATTCCGTCCTCCAACGACATTTTAAGAATCCAGAAACTCGGCGCCAGGGGGGTCAAACAGCGCTGGATCCAAAGGTAGAAGAGGTAATTGTGTCTCGCATCATCATCTGCTCGGAATGGGGCTATCCATTTGATCGAACTACTCTGCGACTATTCATCAAGGGATATTTGGATCGAGTTGGAATGAGGATGAGTGCCAACATAAAGCGTTCAAGGGCAATGGTGTCTCGCACCACCCTCCGTTCATATTTTGACAATTTGAAGAAGGAACTTGAAGGTGTTCCTCCGTCCAACATCGTCAATTTTGACGAGACAAACCTTCAGGACGATCCCGGTCGCAAAAAGATCATCACAAAGAGGGGCTGTAAATACCCGGAGAGGGTTATGAACAATTCAAAATCTGCCCACTCCATCATGTATGCTGCGGCCGGTGACGGCGTTGTCCTGCCAGCCTACGTGGTTTATAAAGCAAAGCATTTATACGACACTTGGATAGAAGGAGGGCCCAAAGGAACGCGATTCAATCGCAGTCTGTCGGGATGGTTCGACAGCGAATGCTTTGATGACTGGCTTGCGAAAGTGATTGTCCCATATTTTCAAAAGCTCGATGGCCCCAAAATTATTATTGGAGACAACCTCTCATCACACCTCTCCGTGGCGTCTGTAAAACTGTGTGAAGATAACGGCATTAGAATGGTTTTCTTACCCCCTAACTCCACTCCCATAACCCAGGAGGTCAATTTTGACAGATTGGAAAATGGGGCCTGGGAAGAGGGAAGCTTGTGTTCCTAA
- Protein Sequence
- MPRNYTPDPRGRRYVRHLPDVISAAISLVKRGKSIRYAAKEYNIPYSVLQRHFKNPETRRQGGQTALDPKVEEVIVSRIIICSEWGYPFDRTTLRLFIKGYLDRVGMRMSANIKRSRAMVSRTTLRSYFDNLKKELEGVPPSNIVNFDETNLQDDPGRKKIITKRGCKYPERVMNNSKSAHSIMYAAAGDGVVLPAYVVYKAKHLYDTWIEGGPKGTRFNRSLSGWFDSECFDDWLAKVIVPYFQKLDGPKIIIGDNLSSHLSVASVKLCEDNGIRMVFLPPNSTPITQEVNFDRLENGAWEEGSLCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00372822;
- 90% Identity
- -
- 80% Identity
- -