Ccil002858.1
Basic Information
- Insect
- Corythucha ciliata
- Gene Symbol
- -
- Assembly
- GCA_038030265.1
- Location
- CM075937.1:26315446-26317131[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.1e-10 5.7e-07 30.4 0.0 2 40 16 55 15 58 0.89
Sequence Information
- Coding Sequence
- ATGCCAAGGCATTATTCGCGCACAACATTGAAGGCTGCATGGACGGCGGAGCAGCTGCAAATGGCAATTGATGAAGTCAACTCAGGTAAAATGAAAGCCAAACATGCCTGTCAGGCATACAACATTCCTTATTCGACCTTTAAGCAACGAAGAAGAGAAGGTAATATGAACGGACCAAAATTAGGGAATAAACCGACCTTCAGTGAACCTTTGGAAATACGATTGAGGGACAGGATCGTTTTACTGTCCAACTTATTTTATGGCATTACACCTGGCGAGCTtcggaaaattgtttttaattttgccAAAGAAAACAATATTCCTAACCGATTCAATGAGAGGAATGGCCAAGCTGGAAAGGATTGGATAAAGGGGTTTTTGAATAGACACAAATCCATCAAAACTCGTTCACCTGAGGCCACATCTGTTAACCGAATTACAGCATTCAGTCGTGCAGAAGTTAGCTTATTCTACTCGAATCTGGAACTTGCCATGAACAAATTCGCTTTTCAGCCACACAACATTTATAATGTGGATGAGACAGGTATTTCTACCGTTCAAGTTCCTAGGAAAATTCTGTGTGAGAAAGGGAAGAGAAGAGTCGGCGCTGTTACTAGTTgggagaggggaaaaaacgtgACTGTTGTATGCGCAATGAGCGCCTCAGGCTCATACGTACCACCCATGTTCATTTTCCCTAGAAAGAGGATGACACCTGCCCTCATGAAAGGTGGTCCTCCAGGATCTATTTACGACTGCTCTGACAACGGGTGGATTACTCAGGAGCTTTTCACGACATATCTTGACCATTTCATAACCCATTCGAAGGCAAGCAAGGATAATCCTGTGCTTCTCGTCCTCGACAATCATTTTAGCCATACAACCCTCGAAGCGTATGATAAATGCCGAGATAATGGTATTTGCATGGTTTCACTACCCCCTCACACATCCCACAGAACTCAGCCCCTTGATGTCACATTTTTTGCGCCCCTGAAGGCTGCATTTCGAGCAGAATGCGACAGGCTCCTGAGGACTGAGGCTCTCAAGAAAATAACGCCTTTTGATCTGGCTGAACTTTTCAATTTGGCCTATGCAAGGGCAGCAACTTTAGGGACTGCCGTTTCTGGGTTTCGTAGTGCTGGAATCTACCCACTGAATCCTGGTATCTTTACTGATGAGGATTTCCTAGCTGCTGATGTTCTCACTCAAAGTCAGGCCCAGGAGCTACCAGTCATCCTAGACTCATCTGCACCGTCCAGTTCTCAATGGTCTGGAGAGGAGACTAGCCCCATTGAATCTTTTATGCCTCTTCCAGTAAAAACTAATCCTGCAAAAAGAGGAGGAAGAGCAAAGCAGCATTCCGAAATCTTAACAGCAACTCCTAGGAAAGAAGAACTGTTGGAAAAACTGgaaagaaaacgtgaaaaagagaaaaaaatcaaaaaccccAAAAGAGAGGTCTTGAAGCGAAACATTGAATTCGAAACCTCCGGCATCCCCAATGACCCTGAAGCAGGACCCTCACAGAACAAGACGAGAAAGGCGATCACACCAAAACCAGTCGTCAAAAAAGCTGCCAAGAAGACGAAGAAAGTGGTTTATTCTGATGACAGTGACACCGACCACGGATTTGATGATGAGGATCTATGTGATGACGACGAACTCGATGACATTCTTGAGGAATGA
- Protein Sequence
- MPRHYSRTTLKAAWTAEQLQMAIDEVNSGKMKAKHACQAYNIPYSTFKQRRREGNMNGPKLGNKPTFSEPLEIRLRDRIVLLSNLFYGITPGELRKIVFNFAKENNIPNRFNERNGQAGKDWIKGFLNRHKSIKTRSPEATSVNRITAFSRAEVSLFYSNLELAMNKFAFQPHNIYNVDETGISTVQVPRKILCEKGKRRVGAVTSWERGKNVTVVCAMSASGSYVPPMFIFPRKRMTPALMKGGPPGSIYDCSDNGWITQELFTTYLDHFITHSKASKDNPVLLVLDNHFSHTTLEAYDKCRDNGICMVSLPPHTSHRTQPLDVTFFAPLKAAFRAECDRLLRTEALKKITPFDLAELFNLAYARAATLGTAVSGFRSAGIYPLNPGIFTDEDFLAADVLTQSQAQELPVILDSSAPSSSQWSGEETSPIESFMPLPVKTNPAKRGGRAKQHSEILTATPRKEELLEKLERKREKEKKIKNPKREVLKRNIEFETSGIPNDPEAGPSQNKTRKAITPKPVVKKAAKKTKKVVYSDDSDTDHGFDDEDLCDDDELDDILEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00372816;
- 90% Identity
- iTF_00372804;
- 80% Identity
- -