Ccil024051.1
Basic Information
- Insect
- Corythucha ciliata
- Gene Symbol
- -
- Assembly
- GCA_038030265.1
- Location
- CM075941.1:40457743-40459428[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.8e-11 6.2e-08 33.5 0.0 2 40 16 55 15 58 0.89
Sequence Information
- Coding Sequence
- ATGCCAAGGCATTATTCGCGCACAACATTGAAGGCTGGATGGACGGCGGAGCAGCTGCAAATGGCAATTAATGAAGTCAACTCAGGTAAAATGAAAGTCAAACATGCCTGTCAGGCATACAACATTCCTTATTCGACCTTTAAGCAACGAAGAAGAGAAGGTAATATGAACGGaccaaaattaggaaataaaccGACCTTCAGTGAACCTTTGGAAATGCGATTGAGGGACAGGATCGTTTTACTGTCCAACTTATTTTATGGCATTACACCTGGCGAGCTtcggaaaattgtttttaattttgccAAAGAAAACAATATTCCTAACCGATTCAATGAGAGGAATGGCCAAGCTGGAAAGGATTGGATAAAGGGGTTTTTGAATAGACACAAATCCATCAAAACTCGTTCACCTGAGGCCACATCTGTTAACCGAATTACAGCATTCAGTCGTGCAGAAGTTAGCTTATTCTACTCGAATCTGGAACTTGCCATGAACAAATTCGCTTTCCAGCCACACAACATTTATAATGTGGATGAGACAGGTATTTCTACCGTTCAAGTTCCTAGGAAAATTCTGTGTGAGAAAGGGAAGAGAAGAGTCGGCGCTGTTACTAGTTgggagaggggaaaaaacgtgACTGTTGTATGCGCAATGAGCGCCTCAGGCTCATACGTACCACCCATGTTCATTTTCCCTAGAAAGAGGATGACACCTGCCCTCATGAAAGGTGGTCCTCCAGGATCTATTTACGACTGCTCTGACAACGGGTGGATTACTCAGGAGCTTTTCACGACATATCTTGACCATTTCATAACCCATTCGAAGGCAAGCAAGGATAATCCTGTGCTTCTCGTCCTCGACAATCATTTTAGCCATACAACCCTCGAAGCGTATGATAAATGCCGAGATAATGGTATTTGCATGGTTTCACTACCCCCTCACACATCCCACAGAACTCAGCCCCTTGATGTCACATTTTTTGCGCCCCTGAAGGCTGCATTTCGAGCAGAATGCGACAGGCTCATGAGGACTGAGGCTCTCAAGAAAATAACGCCTTTTGATCTGGCTGAACTTTTCAATTTGGCCTATGCAAGGGCAGCAACTTTAGGGACTGCCGTTTCTGGGTTTCGTAGTGCTGGAATCTACCCACTGAATCCTGGTATCTTTACTGATGAGGATTTCCTAGCTGCTGATGTTCTCACTCAAAGTCAGGCCCAGGAGCTACCAGTCATCCTAGACTCATCTGCACCGTCCACTTCTCAATGGTCTGGAGAGGAGACTAGCCCCATTGAATCTTTTATGCCTCTTCCAGTAAAAACTAATCCTGCAAAAAGAGGAGGAAGAGCAAAGCAGCATTCCGAAATCTTAACAGCAACTCCTAGGAAAGAAGAACTGTTGGAAAAACTGgaaagaaaacgtgaaaaagagaacaaaatcaaaAACCCCAAAAGAGAGGTCTTGAAGCGAAACATTGAATTCGAAACCTCCGGCATCCCCAATGACCCTGAAGCAGGACCCTCACAGAAGAAGACGAGAAAGGCGATCACACCAAAACCAGTCGTCAAAAAAGCTGCCAAGAAGACGAAGAAAGTGGTTTATTCTGATGACAGTGACACCGACCACGGATTTGATGATGAGGATCTATGTGATGACGACGAACTCGATGACATTCTTGAGGAATGA
- Protein Sequence
- MPRHYSRTTLKAGWTAEQLQMAINEVNSGKMKVKHACQAYNIPYSTFKQRRREGNMNGPKLGNKPTFSEPLEMRLRDRIVLLSNLFYGITPGELRKIVFNFAKENNIPNRFNERNGQAGKDWIKGFLNRHKSIKTRSPEATSVNRITAFSRAEVSLFYSNLELAMNKFAFQPHNIYNVDETGISTVQVPRKILCEKGKRRVGAVTSWERGKNVTVVCAMSASGSYVPPMFIFPRKRMTPALMKGGPPGSIYDCSDNGWITQELFTTYLDHFITHSKASKDNPVLLVLDNHFSHTTLEAYDKCRDNGICMVSLPPHTSHRTQPLDVTFFAPLKAAFRAECDRLMRTEALKKITPFDLAELFNLAYARAATLGTAVSGFRSAGIYPLNPGIFTDEDFLAADVLTQSQAQELPVILDSSAPSTSQWSGEETSPIESFMPLPVKTNPAKRGGRAKQHSEILTATPRKEELLEKLERKREKENKIKNPKREVLKRNIEFETSGIPNDPEAGPSQKKTRKAITPKPVVKKAAKKTKKVVYSDDSDTDHGFDDEDLCDDDELDDILEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00372816;
- 90% Identity
- iTF_00372804;
- 80% Identity
- -