Ccas045101.1
Basic Information
- Insect
- Coronaproctus castanopsis
- Gene Symbol
- RREB1
- Assembly
- GCA_032883995.1
- Location
- CM065054.1:72187322-72208117[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.4 1.8e+03 1.3 1.2 2 15 159 172 158 175 0.89 2 11 4.4e-05 0.012 17.5 0.2 1 23 593 615 593 615 0.98 3 11 0.18 49 6.2 0.3 1 23 625 647 625 647 0.98 4 11 0.027 7.4 8.8 4.1 1 23 653 676 653 676 0.97 5 11 0.064 18 7.6 1.2 1 23 1474 1497 1474 1497 0.96 6 11 0.009 2.5 10.2 1.5 3 23 1882 1902 1880 1902 0.96 7 11 1.9 5.2e+02 2.9 4.8 1 23 1908 1931 1908 1931 0.93 8 11 1.1 3e+02 3.7 8.0 1 23 2010 2034 2010 2034 0.94 9 11 0.0036 1 11.5 1.4 1 23 2189 2212 2189 2212 0.98 10 11 0.0039 1.1 11.4 0.3 3 23 2261 2281 2259 2281 0.96 11 11 0.0034 0.93 11.6 4.6 1 23 2287 2309 2287 2309 0.97
Sequence Information
- Coding Sequence
- ATGGACGAGCAAGTAGATGACAGTCATCACGTCTTATCAGAAAACGAACCACATATTGCCGACGAAGATGCTAATTCGGACGATTACGAAGTTAACAAAGAGTCGGTCGATCAAACGATTACGCCGAAATATGAAGAAGAATCGTCATCGATACGAATgcattctaataataatcaccatcatcataATACTAACAATAACGAAGATGTCGTCGACGAGGACGGCTATGTTGAAGATGACGTCAACGATAACATTAACAGCGCCGACGATAAAAAGGACACTTTATCCGACCAGTACGATACAGCTACCTCTGAATGCGCATTAGTCAGCAGTACAGATTTGGCTACACCTACAAAATCCTATTCATTCAAATGCGATCGATGCGGCCGTCATAatgacgataacgataataataatattacggcTAGTAGTCATATTTATAGCGATAGCGAAAGCTCGAACACTGATAGTAAACGATGCAACTTTTGCGATTCCGGATTTACTTCGTCTGATAATAATACCACTGTCGACAGTCTGCTCGATACTAGCGAAAAATTGGCCGATATCGTCGTTAGCGCGTCAAACGACGAAGACGATAACAGCAATGGTAGCATTGGTGGTGTTGGTGATAAATCGTCGACGTTGAAAGAAATggagaaaatgaaaactaaaaaacaGACAACAGTCGCGATAGTGACTACCGATGAAGAAGAATTAACGGAAAGCGGCCTGGAAAGAAGTAGCGAGGATAATGAATATGTTAActtatttcatcatcatcatcatcatcatcattgtgaTAACGATAATTTCGATGATAACTacaacgataacgataataacgataacCTAGATGAGAAGAAAGATGAGCaggacgacgacgacgacgacgacgataataataataataataatgaaaataaatcgtcTCGTTCGATAATAAAATGTCGTTCATCTTACAAAACTAACTCGTCACCATCttcttcatcatcgtcatcatcttTATCATCTTCGCGTGTTAGGAAAATTCATCATCGTCGACGTAAAGAAGAAGATAATGATGTAAACGATATAACGACGATGACGATAAATGAGAGCGGTAATAgcagtagtagtattagtagtagtagtagtagtagtagtgttaGTAAAAGTAGTAGTGGTACAACTTTTAGTAAGTTAAAACAAGTTCTAGAAAGTTCCAATAacgaagataaaaaaaagaatatcttTATGGCCGAATTGAATTTGCAACATAAAAGATATCGTCCATCTACTAACGAGGATGattgtagtagtagtagtagtaacaataataataataattacttttatcaCCCTAgccataatattaataataataataataataataatgaaaaaaccgATCCTGCTTATTCGaaggataattttaaaatttacaatgaGGAAATGTCGAgcattttaaataaacgtttaccGACATCTCATCACAGACAATCGTCGACGACGATAAATTTACTTTTACCGATAACGGATCGTTTTAATACCGGACCGGTTATCAGCGGTGGCGGTGAAAATACTTCAACGAACGATTTACCGACGACAAACAACGCCGATACTATTATCAACGATAGTAATCATCATCTTAagaatactactactactacgactactactaataataataataatcatcatcataataacGTCAACAATAACGGTTACGTAGAAGAACCGGACGAAGACGATGATCCGTTCAAGTCGGAAGTTAGAGATATGAAACGTAGAGGTGAATTTCCGTGCCGTTTATGCGGTAAGGTATTTCGTAATTTACGAGCTTTAAAAGGTCACGCTCGTGTTCATATATCCGGTAATCGCGGTAGCGTACCGTACGAATGTAACGTATGTACGTTTACGACGATCGATAAAACGATCGTTATACGTCATATAAGAAATCATAACGGCGATCATCCTTATAAATGCCAACTTTGTTTTTCTACGTTTACTACAAAAGCGAATTGCGAACGACATCTACGTAATGCTCATCGGAAAACTAGCAGAGACGACATAAAACGATTACTGTTAGATTTAAACGCTAAAtgcgctaataataataataataataataataataataatagtaatgatatgaataatgatatgaataatgataatgcgaataataacgatattaatcgtaatagtaataataagaataataatatgaataaaaacgacggaatttacgaaaataatacTTTGCAAAGTTTACTGATGGAAGCTAAACAAGAACAACCTAAAGATTACGTAACTTTAGAATTGACCGAAAACGACCAGAAATATCGTAGAAAACCGAAAAAATTACCGCCGCTTAGATTAATGATGCATCATCCGACAACGCTTAACGTTAAAAATCAACGTACCGTCGCTTCTTcaatcgttaataaaaataatactactactactactactaataataataataataatagtaatagtattaataatagtattaataataataataccaattaTAATTGGTTGAAATCGTACGATCGATATCGATTGGTTTCTTCATCGTCATCTTCTTCTAGTAATGTCGACTCGACGACGTCACTTTCAAATCCTTCATCGACATCTGTAGTCGTCGTAGTCGATGAAGATCAGGAGGAAGAagatgataaagaaattaagaagaaaatcAAAAGAGACATTCACTGGAAAAACATCATCGGATCCAACGATCGTAAAATAATAACCAAGACCGTtagcgatgataataataataatagtaataataatcacggtgtttacatttataaacaGTCCTCAATAGATGACGAAAATGATTGTATTATTAAGAAAACCGAGGAACAACCCAATGcagaaatttttcacaataataataataataataatagtgacgCTATCGTTGTAGAAAATGCGGATCGTCGTCTTAACAGAAGTAGTAGTAACAGTAGCAGTAGCAGTAGTGATAGCAGTAACGGTAGCCAAATTAGTAACAGCGACGTAAGTTTACAGCATCAGGAAAATAAGGAGAATAATTTAACCGTTATAGACGAAATAACGTTGAAATTATCAAACTTCGAAACCGGCGATAATTTCATTGCACcggacgacgacgacgataacgataataacgcGGACAGTGTCGGTGGtggtaaaaatattaataatcgcaCGGTCAGAATCCGCTTAAACGCTAATAATTTATTAGACATTtctcctaataataataataataataataataatcgttatcgcgctaattacgataatattaacgataatattaacgaAGAAGCCGACGACGAATGTAATGACGACGACGAAACGAGCGCAATCGAATTagaatacgataataataacaataacgataattataataataacgacgggGATGAACAAGACAGGCCGTTAGATTTGACTATGAATGTTTTAGATTTAAGTACGAACAGCAGTAGAaaacaagatgaaaataaaactaaaatctgTTCGTCCTACAGACAATCTTCTTCGATTTGGAACAAATGCTACGTACCGACTAGTGCGCGTTTTAAACCGTTATCGAGATCATCTCAACATATCCATCACTATCAACAACGACGCCTTCTTCAACATCATCGATCGGACGTCACGTTACAACCGATTATTACTAGCGATATCGCTAATATCATCGCTAATAATATTACTAgcactagtagtagtagtagtagtagtaacggTGGTAATaccgttatcattaataatgttaacgaCGACGATAATGACAAAAGTTACATAAAAAAccccgatgatgatgatgatgattataatgataatgataatctGTTTAGGGAAGTAGTGGTAGTACCGACAAATTATACGACTACTACCATTTTAAACAGCGTCGTCGGAGGTTTACCACCACCACCGCCACCGTCGATAACTATGGATTGTTATCGAAAAAAACGAACCAAAGAAGATAACGATTATCAATTATCATCGAAATTATTATCGcggaattataataatgttaaaaatagcaGTATCGAATTATATCATtctaacgataataataatattattaataataatagtagcagtagtagtagtagtaacaatTTACCGTTAGCCGGTATAAAACCGATTATTTTTAGTCATTTAGTGGAGACTAGGTTGAAAGATTATAAAAACATCGATCAAACCGGCGATGATAAACACgatatcgatattatatttaacgGTAGCAATACgaacgagaataataataataataatactactaataataatagtaataaccgTAATAGGTCGGagCAGCAGGTACGTTGTTCTAGCGGTGGTGGTAAATCATCTTCTACGGTGAAAATGGTCATGAAAGACGGTGTTTTAGTGGAAAAACAGAAACAGAGACGATATCGTACGGAAAAACCGTTTTCTTGCGCTTACTGTTCCGGACGATTTACCTTACGCTCGAATATGGATCGTCACGTTAAACAACAACATCCGGCATTTTGGCGTCAGCGACAAAGAGGCGCCGGTAGAGTGCAAAGAAACAATAACGAAATTATGAATAGCCGCCGTCGAAGCGGAGGAGgtgatgaagaaaatattaccggtcaaaaattaactaataaaatcgTCAacgatgaatatttaaatatatccgCATTATCCACGGATAGTAATAATACGTCATTAATCGATAAAgctcgtagtaataataataataataataatagtcataatcTATATGGATCGACGTCTGCGACTGATGTAGtagtaacaacaacaacatcggtaactaattttaaaactgaaatagaAGACGTCGAAACTAGAGATAGTATAGCCGAAATCGAAAATACCGCTAACGCTTTATTATCTTTAGCCAATAATCATCGCGTAGCCTTACGACGACGTCATCAAAATAACGATCTAGACGTTATTAGATTAGTAGAAGGACaaaacgataacgataataatcataacggcgataacgataaaaataataacgatcatCGTGAAATAggacaaaaaaaagaagaagacgatgatgacgatgaagGTGAAATCGATCAATTAGTTATAGACGAACGAGATGACGAACTTATAGAAGAAAAACCGACGATAACGACCGCTATAACCGATAGCGGAATAACTAGCGTCGTTGATAGTAGTAATAGCGGCGGTATTACCGCTAGTGCCGCTATTTCTTCTAGttgtagtagtagtggtagtagtagtaatagtaatagtagtagtagtagtagtagtactagAGAAAAATTGCTCGTTAGACGTCAAGGGACAAATGGAAAAGAAGATAATCCGGATCTGGCTAGCGTTAGTACGTTATTAGATAACGTTTCGGCGCAAACGTTCAGTCAGTTCtttcgtagtaataataatggtacTAATAGTAGTACCGTCGCTCAAGAAGACGATCGTGTCAACACCATCGTTAAACAGGACGATAACATCAGCGAAGACGATGAAGAAGGATTAGTAGCCGGTAGCAGTAGTGAAGGAAACGTATCGGGCGGTGAAGAAAATCATCGCTAcagTTTCCGCCGGAAAAATGTCGATATCGAAGAAAATGGCAAAGCaccgaaaaagaaaaaaagcgCTTATTCGTCAGCTCCGAATCGCGTTCATTGCGACTTTTGTTCCAGATCGTTCCCGTGGGCTTCGTCGCTCAGAAGACATACACTCACTCATACCGGTCAAAAGCCTTACAAATGTTCAAGTTGTCCTTTACTGTTCACCACTAAATCTAATTGCGATCGTCATTTCCTTCGAAAACATCGCGCTCAAACGACAGTTTCAACTATGTCCGATACTAATTCTACCGCTAGTCTTACCaccaccactactactactactattactactactactactaatactaatTCGACATCTGTCGTTAACAAAAACAGTTACATCGGTGTCGCAGTAACATCAACAACAACAAGCGGAACAACGGAAAACGGTTCTCCGTTAATACCGACGTTCGTAACAAGGAACGTACCGGAAAGACCGCATAAATGTTGTCATTGTCCCAGTTCGACATTTTCTACTTATAACAATCTTCGTAAACATATGTTAGAAAAACATAACGCTATTGCCACCGATGATGATATTAAAAGTTTCAAAGAGAAATCAGCCTCTTCTTCAGCCGTAATGGCGCGTCATGTTAAAAACGAAACATCATCGTCGGAAACATACGTTGGAGCGAACAGATCGAAAAAGTCTCGCGATCCGGACGAAGAAACGTCAAATTCAAGCGTTAAAATAGTCGCTAGTAACGATTTATCGTTAGCGAGCAGTGTTACCAACACGGTCGTTACTACGGCtgttaataatactaatactgttactactactactaataataataatactaataataattacgataatagCAATAACGGTGGCAACAacgacgataatattaataataataataataataataataataataatgatagtaattataattttaacaacggTGGTTCGGTTACTACAATCGGAAATTGTAACCCAACCGTCGTAAGCGGTAATTCGGATTTACCGTTTAAATGTCACTTATGCGAATACGTATTTATAGATAGGCAACAAGCTTTAGATCATATTAAAAAACTTCATACAGCCGAATACGATCATCTGATTTATAAAGGCGCCTTAGATCTCAATGCTCGCCTAGAAGAATTCGTTCATCACGACGATATGATGGACGATGCGGAACATTTCCGTGGACGATTTCCAGATTATTCTAGTCGAAAAGTAATATGCGCTTTTTGTTTACGACGATTTTGGTCTGCCGAAGATTTAAGACGTCACATGAGGACTCATACCGGCGAAAGACCGTTCGCTTGTGACATTTGCCAGCGACGTTTTACTTTGAAACATAGCATGCTACGTCATCGTAAGAAACATTCGATCGTTAGTAGTAAATCGTCGACAGCCGGCAGTAACGGAGATAATTCGGCTAATACCGACGACGAAGATTCGTACCATTCGTCTTCTGCCGCGAACGTTGCACCGTCCGTTTTACTAGCGACCGTATCCGGTACCGGTTCGTTATTAACGGTCGGCGCTTACAATCATAATAACAAATCGCGTAgatctaataacaataataataataataataataataataacaataatagtaataattattattataattacaataataataacaacgacgGACGTCGTAACGATACGTTAGTAAACGATTATTACACGGCCAAGGGTAAAGATACGTCGTTATCATTAACGTCCGGTTTTATCGATCGCGAGCATCGTAATAatcatttcgaatcgatcgTTAGACGTAACGCCGGTAATACGATTAACGTTCCGTTTTCCACCGGACGAACGACCGATAACGTGAGTCATCATCAGTCGTCGAATAACCATAAAGAGGATAGCGTCGATCTGATCGCTAAACTTTTAGATATAGAAGATAAATCGTTAGTCGACGAAATGTTAACTAGTAAATCGGCCGACGATGTAGCTAAACTACTGGGTGTTAACAAATAA
- Protein Sequence
- MDEQVDDSHHVLSENEPHIADEDANSDDYEVNKESVDQTITPKYEEESSSIRMHSNNNHHHHNTNNNEDVVDEDGYVEDDVNDNINSADDKKDTLSDQYDTATSECALVSSTDLATPTKSYSFKCDRCGRHNDDNDNNNITASSHIYSDSESSNTDSKRCNFCDSGFTSSDNNTTVDSLLDTSEKLADIVVSASNDEDDNSNGSIGGVGDKSSTLKEMEKMKTKKQTTVAIVTTDEEELTESGLERSSEDNEYVNLFHHHHHHHHCDNDNFDDNYNDNDNNDNLDEKKDEQDDDDDDDDNNNNNNENKSSRSIIKCRSSYKTNSSPSSSSSSSSLSSSRVRKIHHRRRKEEDNDVNDITTMTINESGNSSSSISSSSSSSSVSKSSSGTTFSKLKQVLESSNNEDKKKNIFMAELNLQHKRYRPSTNEDDCSSSSSNNNNNNYFYHPSHNINNNNNNNNEKTDPAYSKDNFKIYNEEMSSILNKRLPTSHHRQSSTTINLLLPITDRFNTGPVISGGGENTSTNDLPTTNNADTIINDSNHHLKNTTTTTTTTNNNNNHHHNNVNNNGYVEEPDEDDDPFKSEVRDMKRRGEFPCRLCGKVFRNLRALKGHARVHISGNRGSVPYECNVCTFTTIDKTIVIRHIRNHNGDHPYKCQLCFSTFTTKANCERHLRNAHRKTSRDDIKRLLLDLNAKCANNNNNNNNNNNSNDMNNDMNNDNANNNDINRNSNNKNNNMNKNDGIYENNTLQSLLMEAKQEQPKDYVTLELTENDQKYRRKPKKLPPLRLMMHHPTTLNVKNQRTVASSIVNKNNTTTTTTNNNNNNSNSINNSINNNNTNYNWLKSYDRYRLVSSSSSSSSNVDSTTSLSNPSSTSVVVVVDEDQEEEDDKEIKKKIKRDIHWKNIIGSNDRKIITKTVSDDNNNNSNNNHGVYIYKQSSIDDENDCIIKKTEEQPNAEIFHNNNNNNNSDAIVVENADRRLNRSSSNSSSSSSDSSNGSQISNSDVSLQHQENKENNLTVIDEITLKLSNFETGDNFIAPDDDDDNDNNADSVGGGKNINNRTVRIRLNANNLLDISPNNNNNNNNNRYRANYDNINDNINEEADDECNDDDETSAIELEYDNNNNNDNYNNNDGDEQDRPLDLTMNVLDLSTNSSRKQDENKTKICSSYRQSSSIWNKCYVPTSARFKPLSRSSQHIHHYQQRRLLQHHRSDVTLQPIITSDIANIIANNITSTSSSSSSSNGGNTVIINNVNDDDNDKSYIKNPDDDDDDYNDNDNLFREVVVVPTNYTTTTILNSVVGGLPPPPPPSITMDCYRKKRTKEDNDYQLSSKLLSRNYNNVKNSSIELYHSNDNNNIINNNSSSSSSSNNLPLAGIKPIIFSHLVETRLKDYKNIDQTGDDKHDIDIIFNGSNTNENNNNNNTTNNNSNNRNRSEQQVRCSSGGGKSSSTVKMVMKDGVLVEKQKQRRYRTEKPFSCAYCSGRFTLRSNMDRHVKQQHPAFWRQRQRGAGRVQRNNNEIMNSRRRSGGGDEENITGQKLTNKIVNDEYLNISALSTDSNNTSLIDKARSNNNNNNNSHNLYGSTSATDVVVTTTTSVTNFKTEIEDVETRDSIAEIENTANALLSLANNHRVALRRRHQNNDLDVIRLVEGQNDNDNNHNGDNDKNNNDHREIGQKKEEDDDDDEGEIDQLVIDERDDELIEEKPTITTAITDSGITSVVDSSNSGGITASAAISSSCSSSGSSSNSNSSSSSSSTREKLLVRRQGTNGKEDNPDLASVSTLLDNVSAQTFSQFFRSNNNGTNSSTVAQEDDRVNTIVKQDDNISEDDEEGLVAGSSSEGNVSGGEENHRYSFRRKNVDIEENGKAPKKKKSAYSSAPNRVHCDFCSRSFPWASSLRRHTLTHTGQKPYKCSSCPLLFTTKSNCDRHFLRKHRAQTTVSTMSDTNSTASLTTTTTTTTITTTTTNTNSTSVVNKNSYIGVAVTSTTTSGTTENGSPLIPTFVTRNVPERPHKCCHCPSSTFSTYNNLRKHMLEKHNAIATDDDIKSFKEKSASSSAVMARHVKNETSSSETYVGANRSKKSRDPDEETSNSSVKIVASNDLSLASSVTNTVVTTAVNNTNTVTTTTNNNNTNNNYDNSNNGGNNDDNINNNNNNNNNNNDSNYNFNNGGSVTTIGNCNPTVVSGNSDLPFKCHLCEYVFIDRQQALDHIKKLHTAEYDHLIYKGALDLNARLEEFVHHDDMMDDAEHFRGRFPDYSSRKVICAFCLRRFWSAEDLRRHMRTHTGERPFACDICQRRFTLKHSMLRHRKKHSIVSSKSSTAGSNGDNSANTDDEDSYHSSSAANVAPSVLLATVSGTGSLLTVGAYNHNNKSRRSNNNNNNNNNNNNNNSNNYYYNYNNNNNDGRRNDTLVNDYYTAKGKDTSLSLTSGFIDREHRNNHFESIVRRNAGNTINVPFSTGRTTDNVSHHQSSNNHKEDSVDLIAKLLDIEDKSLVDEMLTSKSADDVAKLLGVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -