Basic Information

Insect: Coronaproctus castanopsis
Gene Symbol: ush
Assembly: GCA_032883995.1
Location: CM065053.1:250539155-250559391[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00035 0.097 14.7 0.0 1 20 228 247 228 249 0.95

2 8 0.00013 0.036 16.0 3.5 1 23 306 328 306 328 0.99

3 8 0.0079 2.2 10.4 1.2 2 21 359 378 359 379 0.92

4 8 0.047 13 8.0 2.0 2 21 828 847 827 848 0.93

5 8 0.00012 0.033 16.1 0.1 2 20 954 972 953 974 0.94

6 8 0.14 40 6.4 0.2 2 23 1021 1042 1020 1042 0.95

7 8 0.048 13 7.9 0.5 1 23 1048 1070 1048 1070 0.95

8 8 0.034 9.5 8.4 0.2 3 21 1216 1234 1215 1235 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00035	0.097	14.7	0.0	1	20	228	247	228	249	0.95
2	8	0.00013	0.036	16.0	3.5	1	23	306	328	306	328	0.99
3	8	0.0079	2.2	10.4	1.2	2	21	359	378	359	379	0.92
4	8	0.047	13	8.0	2.0	2	21	828	847	827	848	0.93
5	8	0.00012	0.033	16.1	0.1	2	20	954	972	953	974	0.94
6	8	0.14	40	6.4	0.2	2	23	1021	1042	1020	1042	0.95
7	8	0.048	13	7.9	0.5	1	23	1048	1070	1048	1070	0.95
8	8	0.034	9.5	8.4	0.2	3	21	1216	1234	1215	1235	0.93

Sequence Information

Coding Sequence: ATGCCTAGAGGAACTTGTCGCCGAGTAACTTTGGCCAGGGAAATTGCATTTGGTCGGTACCGTCAAATTATTGGTGTGCCGGCCGAGAGCTGGATAGATTTCTTCCGTCACAAATCTACCTGGTCTATCGGCCAAGATCTGCGCATCCTTTATAGGATCGTGCTCGAAAGTGGAGACGAAGTTTGCGCTATACAGCCCGCTAACATGGCCGCAAACTCTTCACCCGAGATAATATCATCCAGAATTCAGGACGCAGACGCTGCACAATGTGGAAACATTTTGGAACAGGATCTGGAGAAATTGAACAAATACTTTAAAGCCTGGAAATTGAGACCCAATCCAGTTAAAACAGAGATCGTCCTGTTCCATGTAAATACACAACTAGCTAATGATGAAATAACAGTAAACTTTGAcgaaatacaactaaaaaacacaaaattcccCAGATACCTTGGAATTACGTTAGACCGTTCACTCATTTACAGTAAACATCTGAGTAATTTAgcacagaaattaaaaactcgAAACAATTTGATACAAAAGATAGCTGGTACAGGATGGGGATCAACAGTTAAGGTTTTACGGACATCGGCGCTGGCTTTAGTATACTCTGTTGCAGAATATTGTTCTCCCATCTGGATAAACAGCTCACATACGCCAAAGATCAACACAGTTAAATGTTACGTTTGTCCGCCGTGCGGCATAAAATTTAGCTCGCCGAGTACTTTGGAAGCTCATCAAACTTATTATTGTTCTCACAGACCGAGGAAAGTTAGTAAAGgCGGAACTGAGAGCGAAGACGAATGCGGTCGTGTATATGGATCAAATGGCGCCGGATACGATCAAGATGATTCGAGCAGCGGTGCGGATATACCTGATAATAGCGGCAATAAAGTTTGCAAAACTGGTAAACAGTACAGATGTACTCACTGTTCCTATAGCGCCGATAAAAAGGTGAGTTTGAATCGACATATGAGGATGCATAGTGTATCACCGGCCACTTCCGTTACAAACGACTCAGACTCTGCCGGACAACATCATCAGCAAGCGACAACGACGCAGTCCATCGACAGATATTGCCAAGAGTGCGATATCAGATTCTCTAATTTGAAGACATTCCGCGCTCATAAGATGCATTATTGTAGCACCAGAAACGTTATCAAAACAAACGCTACGACCGTTAATTCGCTGTCGCCAACATTGCCGCTAGATCATCATCCACCTGTAAATTCGCCGCCAATTCCTAATATATTACCGAACTGCGTATCTCCTCCACCTCCGTTTCTAGCTTTACCGACGAATCCCATATTGATTGTACCGTATTCTTTGATACAAGCTGCCAGTATTGTATCCACATCGATGGTGCCGAACGTGGCATCTCAGAATGCGGCGTACTTCCTATTGCCGGATGGAACGTTACAATTGGTTACCCAAACGATGCAGCCTGTATTATCGCATAATGTTCCGTCAAATATCGCTACGACAGTTTTACAACCTACTCAACCGAATCAAATGCAGGTTAAGAATGCCATTGCAGATCGTCGAAATCAACAATTGTTTTCAAATCTGATTCCACTGGCAGCAGCTCCTTTAGATTTAAGTTTGAAAAGAAACGCCACGAACAAAGAGAATTTATCGAATTGTTCCTCGAGCGACACGTACGAAGAAGAAGACAAagaaaatcatcatcatcatcgtgatTTACTCGGTGTACAATACGACGGGAACACTACGGATCACGAAGACATAGTGTGCGCGCCTTCAATTCCTTTACTTCTGTCTACAGCCTCGTCCAATTCAACTCCGTCACCGACACCGTCACTTTCTCCACGAGATAGCGTGGCTGACGATAGTGTTATTAAATCGAACGCACTTTACGGTTCTCCGCCTCTTATTGGAACCGGCGTTCCTCCGAAATCCGCTAAAAGATTGGTAAACGGCGTTATAAAAGGAAACAAATCGGACCCGCAATCGGACAACGTCGGTTCTGATAAAACAATTGCGGCCGCGGATTTATCCATCAACGGTGTTAAACCTTCCGTTCTTAATGGAAGCGCTTCTTCGACTGATCCTCGTTTCTTAGCAGACGTACTGCTAGCTGCTGCGGCTACAGTTTTCGAGTCTGCGCAAAAGTCCGCGGCTAATAATAATGCAAGTACTTCGACCAAGATTCCGACAAGTGTTACTGATCGTACGTTTAAAGATTTGCCATTTCCTCCGGAGATTTTACCTCATCTTACTTCCACCTTGGCGCAACTTTCTTCAGCGGCCTTGAATACTAAGAGAGCGACATCTGTTTCGCCGAACCTTCCAACAGCCTCAAATACAAATACTCCGCTAGCGTTCGCTCAagatttacgtaataacccggCAATTTTACCGTTTTTGAGCTCCGAAATGGTTCGATTAGCGTCATCGCCTTCTGCGACTAATTTCACGTGTACCGTTCCACCGGTTCCGTTCGTTCGGCAAGGCACTTGGAAATGCGAAGATTGTAATATCGGTTTTTGTAAGTACGAAAATTATCTGGCCCATAAGAAACACTATTGCTCTACCCGCAAAGTACAGCACGAATCCGCCGGTCATCATAGTGATTCCGTTTCGCAAAATCCTAAGTCGTCCGGCCAAAGAACTAGTCCTGTGGGATCTCCATTGACGAAACCTTCGTCGCCTTCTCAACCACCGGTCGTAGTTTTAAATAAAGACGTATCCAGTTCTCCGGTAAATTCTACAGTCGGTAACAATAGTAACGGCTCTAATAACAACGCTAACGTTACTAGCGCTGCGACAAACAACGCTAGCAGTAGCGGTGTAATCAATAttaatggaaaacaaccaccgCCGACGTTTGTTCACGTAGTCTGCAATCTTTGCGGTATTAAATTTTCATCGTTGGATAATTTAACGACGCATCAAACTTATTACTGTCCTAACAGAGGTTTGATCCAAGAAACTGATAAATCTAGTCTGAAGTGTACAAAATGTAAAattttattaCCTGTGGATCAGTTACCTATTCATCAGTGCGGAAATCCTGTACTGCCCGTTAGTTCCGGTTGGAAATGTCCATGCTGTTTGGTAATATTCGCTACGGCCGATGCTGTACAGAAGCATATTCAATCGCACAGCGGTATTAAAGCTTTCTTGTGCACCATCTGTAACTATAAAGGAAATACCATAAGAGGAATGCGTACCCACATACGCGTGCATTTCAATAAGCGCAATACTGAAGTTATGGAAGAAAACTATATAACTTGCATATTGGAAGAAACTGGCGGTTCCGCAGTTACTACAGTCGATGAAACAGCAGTTTCGGATAGGAAATCGCGTAAGTCGTCGTGTTCTTCCGAGGAGGTAGTCTGCAACGGAGATAGTCCGTCGAAGAAATGTTCGGACGTTCACACGGAAGCAGAAGACGACGACGAATACATAGACGTGGATGAAGTGTCACCGTCAGTTTCGTCGAATATCGACGGTAAACGCGAGATAAAGTTATCTTCCCCCAATAATGAAGATGATAACGGAATCGGAAGTAAATCTCCGAAAGATAGAACCGATAACAATAACAGCTCTTCTTCGGACGAATCATCAAccggtagtagtagtaataataataataatagcaaaaaGTCGTCGTCAAATTATTGCGATTCTTGCGatatatcgtttaattatttatcgactTTTATAGCTCATAAAAAGTATTATTGTTCGGCAAAACGCGGTATAATGCGCAACATATCTTCGTCACCACCCCTCGACGGTATCGCGATAACCGTTAACGGTACTAGCGAAGCCGCTATACAAATAacctaa
Protein Sequence: MPRGTCRRVTLAREIAFGRYRQIIGVPAESWIDFFRHKSTWSIGQDLRILYRIVLESGDEVCAIQPANMAANSSPEIISSRIQDADAAQCGNILEQDLEKLNKYFKAWKLRPNPVKTEIVLFHVNTQLANDEITVNFDEIQLKNTKFPRYLGITLDRSLIYSKHLSNLAQKLKTRNNLIQKIAGTGWGSTVKVLRTSALALVYSVAEYCSPIWINSSHTPKINTVKCYVCPPCGIKFSSPSTLEAHQTYYCSHRPRKVSKGGTESEDECGRVYGSNGAGYDQDDSSSGADIPDNSGNKVCKTGKQYRCTHCSYSADKKVSLNRHMRMHSVSPATSVTNDSDSAGQHHQQATTTQSIDRYCQECDIRFSNLKTFRAHKMHYCSTRNVIKTNATTVNSLSPTLPLDHHPPVNSPPIPNILPNCVSPPPPFLALPTNPILIVPYSLIQAASIVSTSMVPNVASQNAAYFLLPDGTLQLVTQTMQPVLSHNVPSNIATTVLQPTQPNQMQVKNAIADRRNQQLFSNLIPLAAAPLDLSLKRNATNKENLSNCSSSDTYEEEDKENHHHHRDLLGVQYDGNTTDHEDIVCAPSIPLLLSTASSNSTPSPTPSLSPRDSVADDSVIKSNALYGSPPLIGTGVPPKSAKRLVNGVIKGNKSDPQSDNVGSDKTIAAADLSINGVKPSVLNGSASSTDPRFLADVLLAAAATVFESAQKSAANNNASTSTKIPTSVTDRTFKDLPFPPEILPHLTSTLAQLSSAALNTKRATSVSPNLPTASNTNTPLAFAQDLRNNPAILPFLSSEMVRLASSPSATNFTCTVPPVPFVRQGTWKCEDCNIGFCKYENYLAHKKHYCSTRKVQHESAGHHSDSVSQNPKSSGQRTSPVGSPLTKPSSPSQPPVVVLNKDVSSSPVNSTVGNNSNGSNNNANVTSAATNNASSSGVININGKQPPPTFVHVVCNLCGIKFSSLDNLTTHQTYYCPNRGLIQETDKSSLKCTKCKILLPVDQLPIHQCGNPVLPVSSGWKCPCCLVIFATADAVQKHIQSHSGIKAFLCTICNYKGNTIRGMRTHIRVHFNKRNTEVMEENYITCILEETGGSAVTTVDETAVSDRKSRKSSCSSEEVVCNGDSPSKKCSDVHTEAEDDDEYIDVDEVSPSVSSNIDGKREIKLSSPNNEDDNGIGSKSPKDRTDNNNSSSSDESSTGSSSNNNNNSKKSSSNYCDSCDISFNYLSTFIAHKKYYCSAKRGIMRNISSSPPLDGIAITVNGTSEAAIQIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -