Ccas032951.1
Basic Information
- Insect
- Coronaproctus castanopsis
- Gene Symbol
- -
- Assembly
- GCA_032883995.1
- Location
- CM065053.1:166102241-166105029[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0071 2 10.6 0.7 2 23 158 180 158 180 0.94 2 17 0.0082 2.3 10.4 0.7 1 23 186 208 186 208 0.98 3 17 1.6 4.4e+02 3.2 1.1 2 23 221 253 220 253 0.75 4 17 8.3 2.3e+03 0.9 0.1 3 23 264 285 264 285 0.91 5 17 4.3 1.2e+03 1.8 0.2 1 23 290 312 290 312 0.88 6 17 0.51 1.4e+02 4.7 0.1 3 23 324 344 323 344 0.95 7 17 1.3 3.7e+02 3.4 1.0 1 20 356 375 356 376 0.94 8 17 0.12 32 6.7 1.1 2 23 385 406 384 406 0.97 9 17 1.1 3e+02 3.7 0.5 1 10 413 422 413 437 0.89 10 17 6.2e-05 0.017 17.0 0.2 2 23 444 465 443 465 0.96 11 17 0.0056 1.5 10.9 0.5 1 23 471 493 471 493 0.90 12 17 5.6e-06 0.0015 20.3 0.7 1 23 499 521 499 521 0.98 13 17 6.4 1.8e+03 1.3 0.1 1 8 533 540 533 547 0.88 14 17 0.013 3.6 9.7 1.1 1 23 607 629 607 629 0.98 15 17 0.008 2.2 10.4 0.7 3 22 657 676 655 679 0.91 16 17 0.00021 0.057 15.4 2.1 1 23 776 799 776 799 0.95 17 17 0.22 60 5.9 2.5 3 23 862 882 860 883 0.93
Sequence Information
- Coding Sequence
- ATGGATGTAAATGAAACTAATCGCTTGAAGCTCGGCTTCAATCAGGAGTTGAACTTGTTCGTTTTCGGCGATGCGACTTCTAATCCGGAAATTGAATACGGTGGTACATCGTGGTCGATTAATTGCGAAATTCCGGATGAAACGATGGAAGTTTACGAAGAAAACCCGCAGATTGTCGACATTCCGTTAGAAAATTCCGTAACGGACGCGAATTATTGTTTAGAAATAGAAGAATCAGTTACGAATACGATAGCTGAGCAGATTTCGTGTTGTAAGACGGAACGACGAGAAGATTGGAAAGTATTGGATCAATTTAtaatcgaagaagaagaagagacaATAGAGGAGGAACCGATTAAACGGACTAGAGGTCGTCCTAAGGGCTCGAAAAAGACGTCGCGATCGTCGACAATTAGTAAAAATTCGCACGTGGAAAATGACTACGACGACGGTACACCGATGGCGGAGCCTACTTGTAATTTTTGCGATACGATATATTCGTCGATGGCCGAATTATTCCGTCATTTTCTAAGTCAGCACGTTACGCTGACCGGTTACGAATGCGGTCACTGTACGGCGTTTGTAGAAAACGTGGaaaattttattcgtcattTACAACGGCATAATTTCTCGGCGAAAACGAGATTCGGCGTCACGTTTATCTGTCCGCTGTGTAAGCGCGATGACGCGACGCTCACCGACGATGAAATCACGTTCACGTCGACGAAGGAATTTTACGTTCATTTAAAAACGGCGCACGAACTATTTAAAACGGCCACCGCTAACGGTTGTCGCTTATGCGACGAGGTGATATTCGGCCAGCAGAATTTCATCGATCACGTAATGGACGCGCATTACGATCAACGTCACTCGTGTCCGTTATGCGAACAGGCTATATGGTCGAATAGCGAAATAAAGGAACACCTAAGCTTACACTATCAGAATGTGTGGAAAGACGAACGCGATTTATGTCCTTTGTGCGAGTTGAACTTTTCCGTCTACGATCTGTCTACTCACGTGATAACGAAACATACGGAAGTGCGTCTGATCGAGAAACCGTTGTATCATCGGTGTCTTATCTGTTCGAACGGTTTCGGAACGTTGAATAAATTAGCTCAACACGTTTGCCCGCAATTGCGAGTCGACACGACCGAGTGCGTCGTATGTCGCGCGAAATTTCCCTCGAAAAAACGATTAACTTTCCACATGCAAACTCACTTGAACGTCGACTTTACTTTCGAGTGCGACGTTTGTTGGCGTTCGTTCGGCAAAGACGAAGACGTTTTCTACAATCACGTTCGTTTTACGCACGAAGTCGGTACCGATTTGACGTGCGAAACTTGCGGCGCCACATTTTCCAATAAAGTCGGTTTGCTGATTCATCAACAGTACCATATCGGACGCAGAAGGTTCGCGTGTAAAGTGTGcggtaaacgatttttaaacGACAGCACTCTAAAAGAGCACAAAGTCGGCCACGAAAAGGTGAAACCTTACATGTGTCACATATGCGGTACGAGTTTGTCGCGACCTTCCCGATTACGAATACACTTACGAGCGCATTCGGTACAGTCCTGTCGTAATAGTCAAATATGCTACAGTTGCACCGTTTGCGGTTTCGTCGCGCCGGTTTCGACCGATTTCCCGGCACGTCATAACTGTTTACCGGACGATGGTAGAACGTGCGCTAATTATAAACGGATCGTCTTGAATAAGGTATTAATATGCGAATTTTGTTGCAACTATTTCGAGAATCGACATTCGTTATACAAACACGTGGAACTAGTTCATTCGGACGACAAAGACGACGGTCTTCGTTATAGTTGCAATAAATGCGACGCTCGTTTTATCGCCTTTTCCCGATTATCGACGCACAGATTATCACACGGCATTAACGCCGAAACCGGAATTCTGTCGTCCGATAAGAAATCACGTCGAACGGAATTTATTATACCGCAATTATTCGGCTGTAAATTATGCGATCGCGTTTACAATCAGTATACCGCTTTTAACGCGCATCGAAAGTACGCTAAACATAAGAGTaccagaaataaaaataaatccgacGCGACTAGTACAAAAACACCAATTAAAAAACGAACACGCCGCGATAAATTTAACGATtcagacgacgacgacgataacaataataataataataaaaataaaaataataataataataataataataataatagcgataagcCGGATCCGGTTACCGACGATGAGAATGAGGCTAACGACGATGGCGGTAATCTAGCGTTAAAAGTCTATTTCAGCCGTTACTTGAAATCGGGCGATACGgaatattttaatcgtaaataCATTTGTAACTACTGCGACAAACGATATCGACTAGAATCGACTTACAAGAAACATCTTTTATTACGTCATCCGAAACAGCAATCGGACGAGATCGATCGAAAAGAACCGAATCATGGCAGACCGGTTGCTAGTAGCGGCGATCAATGTTTTAACGCACTGGCCTCAACTGAACAATCCGGTTTGAACTTCCGGAATAACTTTAGTTCGCTCGGTTGCTCCGCCGATTACGATGAAATGAATCCGTCGTCGCAAATTTGCGAATTTTGCGAGCTCCATTTCAACGATAAATACGATTACgatgtacataaaataaatcatCATTCCGAGATTACCGGCTCAACGGATGACACATTCAAAGGTGGACTACCtagtttagttttttaa
- Protein Sequence
- MDVNETNRLKLGFNQELNLFVFGDATSNPEIEYGGTSWSINCEIPDETMEVYEENPQIVDIPLENSVTDANYCLEIEESVTNTIAEQISCCKTERREDWKVLDQFIIEEEEETIEEEPIKRTRGRPKGSKKTSRSSTISKNSHVENDYDDGTPMAEPTCNFCDTIYSSMAELFRHFLSQHVTLTGYECGHCTAFVENVENFIRHLQRHNFSAKTRFGVTFICPLCKRDDATLTDDEITFTSTKEFYVHLKTAHELFKTATANGCRLCDEVIFGQQNFIDHVMDAHYDQRHSCPLCEQAIWSNSEIKEHLSLHYQNVWKDERDLCPLCELNFSVYDLSTHVITKHTEVRLIEKPLYHRCLICSNGFGTLNKLAQHVCPQLRVDTTECVVCRAKFPSKKRLTFHMQTHLNVDFTFECDVCWRSFGKDEDVFYNHVRFTHEVGTDLTCETCGATFSNKVGLLIHQQYHIGRRRFACKVCGKRFLNDSTLKEHKVGHEKVKPYMCHICGTSLSRPSRLRIHLRAHSVQSCRNSQICYSCTVCGFVAPVSTDFPARHNCLPDDGRTCANYKRIVLNKVLICEFCCNYFENRHSLYKHVELVHSDDKDDGLRYSCNKCDARFIAFSRLSTHRLSHGINAETGILSSDKKSRRTEFIIPQLFGCKLCDRVYNQYTAFNAHRKYAKHKSTRNKNKSDATSTKTPIKKRTRRDKFNDSDDDDDNNNNNNKNKNNNNNNNNNNSDKPDPVTDDENEANDDGGNLALKVYFSRYLKSGDTEYFNRKYICNYCDKRYRLESTYKKHLLLRHPKQQSDEIDRKEPNHGRPVASSGDQCFNALASTEQSGLNFRNNFSSLGCSADYDEMNPSSQICEFCELHFNDKYDYDVHKINHHSEITGSTDDTFKGGLPSLVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -