Ccas006545.1
Basic Information
- Insect
- Coronaproctus castanopsis
- Gene Symbol
- -
- Assembly
- GCA_032883995.1
- Location
- CM065052.1:95589422-95595265[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.019 5.2 9.2 0.4 1 19 239 257 239 262 0.90 2 9 0.59 1.6e+02 4.5 0.0 2 23 270 291 269 291 0.87 3 9 6.4e-06 0.0018 20.2 0.4 1 23 296 318 296 318 0.97 4 9 0.33 90 5.3 0.4 1 23 322 345 322 345 0.93 5 9 0.00015 0.041 15.8 3.4 1 23 354 377 354 377 0.97 6 9 4.3e-05 0.012 17.6 0.5 1 23 384 406 384 406 0.97 7 9 3.4e-06 0.00095 21.0 2.4 2 23 426 447 425 447 0.96 8 9 4.1e-05 0.011 17.6 2.6 1 23 452 474 452 474 0.98 9 9 4.9e-05 0.013 17.4 1.6 1 20 480 499 480 501 0.94
Sequence Information
- Coding Sequence
- ATGAGTAGTACGTACGAAGTTACGTATAATGATGACGGTCCACAAAAGATTTGCCACGAATGCATGGATAGTGTTAACAGTTGGGTTAAATTTAAACGGAATTGTGATACTACTAGCTCTTTTCTAAAAACCCAATTATCGCCATCAAAATCAACTAAATCAGATAAAGAGGTATGTTCGTCTTTATTACTGCAACGCGATCTCGATTCGTTATTAAGTAACGAATTATTTCCTACCACGACCGCCGTTCATTCGGAAATCGAGATGATGATAACTCAACCGGCTCGTCCGTCGTCTACTATTTCGTCTATACTAAATTTTCACATCgacgaaatacaaaaaaaacgtTTATCCAAACAAAACGATCACCAACTCGATAACGAATCCGGCGAAGATACCAACGCGTCTTCGATTTggaatttatgtttaaataataacgacgtCGTTAAATCGCCCGTTAACGAAAATCCTTATCTTCGATCGTCGTCCTGTAGCGCGGATAATAATACGGATAATTTATCGTCAGAAAACCAAAATAACGGCGACGTTCGATTTCTAAACGCTAGTCGATACGTACGAGTCGAACTGGAAGAACATAATtatagcgataatattattaataataataataattataatatcgatgataataataatacaaacgtaGTCACGATTAGTAATCGacctaaatttaaaatcaaaactaAAAAAGGTTATACGTGCGAAATTTGTAAAGGCGTCTATAAGAAATTTTCCGACTTGTTAAGTCACGATTTAACGGTACACGAATCGTTAGAAAAAAACGTCGTATGTCCAGTTTGCGGTCAATTATTTCTAACGGAAACCCGGCTAGAAGTGCACGCGGTTAAACACGTCGAGAAAACGTTCGAATGTCAAATATGCGGTAAAATGTACGTCAATCAAAAATCGTTATACTCGCATCGAGCGATACATCGTAGCCGTTATCGTTGCGACGTGTGCGCTTACGTCGCTACGTCCGATCGTCTATTGATCGAACATCGTTGTGCGCGTCACGGTCAAGAGAATCATCGTAGTGAATTTCAATGTTCGACGTGTTATCAACGATTTTCCACATCGTGGTCGTTATCGCGTCATACGAAAAATCGTCACGAAAACGTTAGAAATTCTTACAAATGTTCCGTGTGCTCCGCGATTTTTACTCGATACGACGATTTAAAAACTCACGCCAACCTTCACGATGACgttaatagtaatagtaatagtaataataataataataataataataatcttatttgCGACATATGCGGATTATGTTATAAAAGTAGACGGTCGTTGAAAAATCACATACGTAAGCATGCGCCGGCTCGATTTCAATGTTCCACGTGTCAGAAATCATTTTATACCGCGTTCGAATTGTCTACGCATTCGCAAACGCATTCCAACATTAAAGGTTTCTTTTGCAGTATTTGTCGAAGAAGTTTCTCCTATAAAGTCACCCTCAAACGGCACATATTTTCGAAATGCGATCCGacgcttaaaaataaattaaaaggtcgcaatgttaaaatttaa
- Protein Sequence
- MSSTYEVTYNDDGPQKICHECMDSVNSWVKFKRNCDTTSSFLKTQLSPSKSTKSDKEVCSSLLLQRDLDSLLSNELFPTTTAVHSEIEMMITQPARPSSTISSILNFHIDEIQKKRLSKQNDHQLDNESGEDTNASSIWNLCLNNNDVVKSPVNENPYLRSSSCSADNNTDNLSSENQNNGDVRFLNASRYVRVELEEHNYSDNIINNNNNYNIDDNNNTNVVTISNRPKFKIKTKKGYTCEICKGVYKKFSDLLSHDLTVHESLEKNVVCPVCGQLFLTETRLEVHAVKHVEKTFECQICGKMYVNQKSLYSHRAIHRSRYRCDVCAYVATSDRLLIEHRCARHGQENHRSEFQCSTCYQRFSTSWSLSRHTKNRHENVRNSYKCSVCSAIFTRYDDLKTHANLHDDVNSNSNSNNNNNNNNNLICDICGLCYKSRRSLKNHIRKHAPARFQCSTCQKSFYTAFELSTHSQTHSNIKGFFCSICRRSFSYKVTLKRHIFSKCDPTLKNKLKGRNVKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -