Ccas047611.1
Basic Information
- Insect
- Coronaproctus castanopsis
- Gene Symbol
- -
- Assembly
- GCA_032883995.1
- Location
- CM065054.1:108751151-108752599[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.9e-07 5.1e-05 25.0 0.9 1 23 130 153 130 153 0.97 2 12 8.4e-09 2.3e-06 29.2 1.0 1 23 160 182 160 182 0.98 3 12 4.4e-08 1.2e-05 26.9 0.8 1 23 188 210 188 210 0.98 4 12 0.26 71 5.7 1.9 1 20 215 234 215 236 0.93 5 12 2.1e-06 0.00058 21.7 0.3 2 23 248 269 247 269 0.97 6 12 9.2e-07 0.00025 22.8 1.4 1 23 275 297 275 297 0.98 7 12 0.00018 0.049 15.6 5.2 1 23 303 326 303 326 0.97 8 12 1.2e-05 0.0033 19.3 1.0 1 23 332 354 332 354 0.98 9 12 0.0014 0.39 12.8 2.3 1 23 360 382 360 382 0.98 10 12 0.00065 0.18 13.8 0.8 1 23 389 412 389 412 0.97 11 12 0.0039 1.1 11.4 0.1 1 23 420 442 420 442 0.96 12 12 6.2e-07 0.00017 23.3 0.5 1 23 451 473 451 473 0.98
Sequence Information
- Coding Sequence
- ATGCCACCCTCAGTGTCGTCGTATTATGACGTTCAACCGCCTGCTGTAACAGTTAAAAATTCGGCCCAGTCGACAGATGTTCCGTTAACCGTGATTTCCGATATAGTAATCAGTAATGACGGCCGTCAAGTAATGCCCGTGTGTGATGATAATGATCTAATTAATTATGATGATATTAATTCGAATGGCTGTTACGATAATAAcagtattagtaatattaatgaCGATAATGATCATTACTATATTAACAATAGTAACGATACAAATGCAAACGTGTTGGGTGCAAATGTGGAACGTCagcaaaaaaattatcaacggCACTTCGAAATCAAAAATGACGAGCGATTAACCGATAAACCGACCTTGAATGATTATTATGATACGGAGTTTTCTTGCGTAGATTGCGGTAAACAATTTAATCGTAAGCAAAATCTGGTACGTCATGTGCGACGAATTCATAAATGTCACGTTAAACGATTTAAATGCAGAGACTGCGGTAAAAGCTTTACTTCTGCGTCTAATTTAAAAGTTCACACGCAAATTCATACCGGTACGAAGTTATTCATGTGTCAAGTGTGTGGTAAAAGTTTCATTCAGAAAACTAACTTGATTACTCATTTAAACACGCATTCGAAACAGCGATATTTCTGTTCGTCTTGCGATTCTGGCTTCGAAGATAAAGTCCACTATATATCTCACGTGTGTAACAATGCTAATAAACAGTCACGGATAAAACGTTTGAGGTGCGAATATTGCGGTAAAATGTTTACTCAAGTTGCTTTCTTGAACATACATATTAAAAGTCATACGGGAGAGAAACCATTCAGTTGCGAATATTGTGATGCTCGTTTTAGTCAGCGTTTTAATTTGAATGTCCACGTTAGAAAACATAACGGAGAGAAACCTTATATTTGTAacgtttgtaaaaaaaaatttttcactcTTTCAACTTTACACCGTCATAGCAAGACTCAACATGACGCTGAAAAACGATATCAGTGTGAAATCTGTTGGGAATCATTTACACAACGGGCACATATGCAGTCTCATTCAGCAACTCACAAAAGCTTTTACCACTTCGAATGTAAATATTGTATGCGAGGTTTCATGTTGAAATCTGATTTCATGCGTCATCAAAGTACTCACGAAGTTTTAAAACGACCctttatatgtttaatttgtcaTTCGAAATACATAAAGCGTTCCTCTTTAATTGCGCATATTAACAGAATACACAGTCCTGTTAATCAGCTCGAGTTCGAGTGTGATTACTGTTCGTTAGTGTTCAATAAATTAATCACTCTAGCCGGTCATCTTTTACTTCATGCTTATCAAGCCGATACTCTTTGTTATAAATGTGATATTTGTGCACGTTCATTTGATACATCTTCttctttaaaaaatcatattactATTCACAAACAAGAATTAAGTCCTCGTTTTGTTTAA
- Protein Sequence
- MPPSVSSYYDVQPPAVTVKNSAQSTDVPLTVISDIVISNDGRQVMPVCDDNDLINYDDINSNGCYDNNSISNINDDNDHYYINNSNDTNANVLGANVERQQKNYQRHFEIKNDERLTDKPTLNDYYDTEFSCVDCGKQFNRKQNLVRHVRRIHKCHVKRFKCRDCGKSFTSASNLKVHTQIHTGTKLFMCQVCGKSFIQKTNLITHLNTHSKQRYFCSSCDSGFEDKVHYISHVCNNANKQSRIKRLRCEYCGKMFTQVAFLNIHIKSHTGEKPFSCEYCDARFSQRFNLNVHVRKHNGEKPYICNVCKKKFFTLSTLHRHSKTQHDAEKRYQCEICWESFTQRAHMQSHSATHKSFYHFECKYCMRGFMLKSDFMRHQSTHEVLKRPFICLICHSKYIKRSSLIAHINRIHSPVNQLEFECDYCSLVFNKLITLAGHLLLHAYQADTLCYKCDICARSFDTSSSLKNHITIHKQELSPRFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -