Ccas012859.1
Basic Information
- Insect
- Coronaproctus castanopsis
- Gene Symbol
- ZNF236
- Assembly
- GCA_032883995.1
- Location
- CM065052.1:183785635-183807160[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0024 0.66 12.1 1.6 1 23 158 180 158 180 0.98 2 17 2e-06 0.00055 21.7 1.5 1 23 186 208 186 208 0.98 3 17 0.075 21 7.3 0.5 2 23 215 237 214 237 0.86 4 17 6.2e-05 0.017 17.0 1.0 1 23 246 268 246 268 0.98 5 17 8.1e-06 0.0022 19.8 2.0 1 23 290 312 290 312 0.98 6 17 3.4e-07 9.2e-05 24.2 0.7 1 23 318 340 318 340 0.98 7 17 5.8e-05 0.016 17.1 2.3 1 23 346 369 346 369 0.97 8 17 0.00058 0.16 14.0 4.2 1 23 379 402 379 402 0.98 9 17 0.18 51 6.1 1.5 5 23 466 484 463 484 0.93 10 17 0.0057 1.6 10.9 1.2 1 23 490 513 490 513 0.92 11 17 1.3e-06 0.00036 22.3 1.3 2 23 607 628 606 628 0.97 12 17 5.6e-07 0.00015 23.5 2.1 1 23 634 656 634 656 0.99 13 17 6.7e-06 0.0018 20.1 2.6 2 23 663 684 663 684 0.97 14 17 0.0026 0.72 11.9 6.1 1 23 690 712 690 712 0.96 15 17 0.035 9.7 8.4 0.0 1 22 759 780 759 781 0.81 16 17 0.0078 2.2 10.4 0.3 1 21 789 809 789 810 0.95 17 17 0.0084 2.3 10.3 3.8 2 23 814 836 813 836 0.95
Sequence Information
- Coding Sequence
- ATGTATGTTAATATACCAATACAAATAGTCACTTCAGACACACCCTTGCAGACGCCACAATGCTCATTACAGTTGTCTTCATTCGTACCTGACCCTCCTCCACTTTCAATGCAAAATGATTACTCAAATTCTGTGTCTGGTGATATATTATCAGTTTTCACCGAACCCGGACagGTGATAGTTGTACCAGATAATTCAACTTTGTCTAATCAAGAATGTATTATCAATGAAAGCGGTCAAAATAATTCTGATATATTTGATACAAGGGTAAATAATtgtgaaaaggaaattatagaaaattcaGAAAATCAAGGATGTGAAGTCACCGTTAAAGATAATGTAGATCAACAATCAAACCTATCTCGGGAATATGAAGTAACTTCTTCCTATTTATGTATTGATACATCGGGATTGTTCCGAACACTGAAACGTTTCAAGGTACACTTTGCTGATCATatgaataacaaaaattttaaatgtgacCAGTGCAGTGCATCGTTTAATAAAAAGATTAATTTCATTCTACATTCATCAACCCATATTACTGAAGGTAACTTTCAATGCCCTTCTTGTCAAAAGAGTTTCCGTCGATTAGCTAGTTTCAGATCTCATATTAAAATACACGAAGAGGAGGATGTACTTGTTTGCAATATATGTGATGAAGAATTTACTAATATGATTTGTTTGAATTTTCACTTGAATGAAGAACATGCTGACGCTGaatctaaagtcagatatgTTTGTAGTAGCTGCACAGAATCGTTTGATACTTATTCCAATTATAAATTGCACATGAATGGCCACGTGCAGatGAAAAAACTGTCTGAACATTATCAAAGGAAATCAAAAGGTTATaggaaatcaaattttatttgtcaCATATGTGAGAAAGGTTTCGAGAAACGAAATCAACTTATAAGACATTACAGAATCCACACTGGAGAAAAGCCGTATAAATGTCAGGTATGCGATAGAGCTTTCAATCAAAAAAGTTCTTTAGCAACCCACATGTTACAGCATGATGGAAAACGGCCTCATCAATGCAAGTTGTGTTCGTGTACATTTGTTCAAAAAGGAAATTTAATAGCTCACGTGATGAGAGCTCATAATTTGCACGAATCTAATGAAATAACTTACAAATGCATGAAATGTTCCTGCGATTTTGCTACATCGAGGACGTTGAAGACTCATATGAATCGTGTCCATAATCATAAAAAACCGGATACGAATTCTGAAGTATCAATTAATTCGCAGTCAGAAAATATAGAAGATTCAACATTGACCGTATTCAATGTTCCATCAACGGGATTAGATTTCTCTATTCTTGAAACTGACAGTATACCGTATCAGATGCATGTTTCAATACACAATGGTCAAAAATCACTGTTTTGCATATTTTGCAATATGGGTTTTAAAACTAAGAAAGCGTTTGAAGAGCATTTTATGAAACATGCGTctaaaaacGAATTCCCGTGCAAATACTGCGGAGAAATGTGCGACTCGGAAACACCGTTGAAACATCACGTGCTGGACGTTCATTTAAGGACGATAAACGAAGGACGAGCTGATCGGTCATCGTGTCTAGTTTTGACCGAGGAGCAACGCAAATATTTGACTTCCGTTAATCTGGACAATACCGCTTCGCTATCTGAACACGTGTTACGTGAtattttgaagaagaaaaagacgaataaagaaacaaataacGATGCTATCGTTATCAGTGATATACATGAGAACGAAATTAACGATAACGATCTAAAACAGGAAGCCAATCCTCGTTCTCGTTGTTATCGTCGCCGTGCCGTCGATAAAACTGTGTGCGAATATTGCAGTAaacaatttcgaaaaatgtCCGATTTGGAAAGACACATAAGGACACATACAAAAGAGAAACCGTATCAGTGTGAATATTGTCGCAAAACGTTCTCTCTTAGTTCAACTCTTAACGATCACATTAAAACGCACACCTCGCTAAAAGAAGCGTCTTGTCACGTATGCAGCCGTTTTTTCGCGAATAAAAGCGCACTAACTACTCACATGAGGCTTCACACCGGTGACATGCCTTATCAGTGTATGTATTGCGATAAAGAATTTCGCACGTCGCATCATCGTAACTCGCACGAATTGAATCACTTTAAAAACGGCGTTTTTCAATTGGGAAATTCGCGATTTAGTCGTAATGTTCAATTTCCGAAGAAGTCGTCGTCGTTAAATAACCCGGCGAACGTTTTAAATAAACCGATTTTACGTAAACGAAACGGTAAACTGACGTTCGTCTGTCCGTTATGTAACAAAATATTCGACAAACGAGATCCGGCTCTAATACACGTCGAAGCTCATCGACCGGCCGTGTTGAAAATTTATCAATGCGATCTTTGTCCGGCTCAGTTCGCATCTAAAAAGACCTACGTTAATCATACGAAATTATATTCGTCCAGTTGTAACCTTTGTAAAATGCATTTCCCGTCCGAACATCATCTGACCGTTCACGTCGACACCGTTCATAACGTCATCAAGCCGGTTAtagacgaaattattaattcggcTCACGATATCAATTTTGACGATAATTTGTACATAGGAACCGATAAACAATTATTGGATTTAGACAGCGTCATAGACGATATTTTTGTACCTTAA
- Protein Sequence
- MYVNIPIQIVTSDTPLQTPQCSLQLSSFVPDPPPLSMQNDYSNSVSGDILSVFTEPGQVIVVPDNSTLSNQECIINESGQNNSDIFDTRVNNCEKEIIENSENQGCEVTVKDNVDQQSNLSREYEVTSSYLCIDTSGLFRTLKRFKVHFADHMNNKNFKCDQCSASFNKKINFILHSSTHITEGNFQCPSCQKSFRRLASFRSHIKIHEEEDVLVCNICDEEFTNMICLNFHLNEEHADAESKVRYVCSSCTESFDTYSNYKLHMNGHVQMKKLSEHYQRKSKGYRKSNFICHICEKGFEKRNQLIRHYRIHTGEKPYKCQVCDRAFNQKSSLATHMLQHDGKRPHQCKLCSCTFVQKGNLIAHVMRAHNLHESNEITYKCMKCSCDFATSRTLKTHMNRVHNHKKPDTNSEVSINSQSENIEDSTLTVFNVPSTGLDFSILETDSIPYQMHVSIHNGQKSLFCIFCNMGFKTKKAFEEHFMKHASKNEFPCKYCGEMCDSETPLKHHVLDVHLRTINEGRADRSSCLVLTEEQRKYLTSVNLDNTASLSEHVLRDILKKKKTNKETNNDAIVISDIHENEINDNDLKQEANPRSRCYRRRAVDKTVCEYCSKQFRKMSDLERHIRTHTKEKPYQCEYCRKTFSLSSTLNDHIKTHTSLKEASCHVCSRFFANKSALTTHMRLHTGDMPYQCMYCDKEFRTSHHRNSHELNHFKNGVFQLGNSRFSRNVQFPKKSSSLNNPANVLNKPILRKRNGKLTFVCPLCNKIFDKRDPALIHVEAHRPAVLKIYQCDLCPAQFASKKTYVNHTKLYSSSCNLCKMHFPSEHHLTVHVDTVHNVIKPVIDEIINSAHDINFDDNLYIGTDKQLLDLDSVIDDIFVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -