Ccas013087.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coronaproctus castanopsis
Gene Symbol
-
Assembly
GCA_032883995.1
Location
CM065052.1:187256868-187258976[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.0089 2.4 10.3 7.0 1 23 104 126 104 126 0.98
2 21 2.7e-05 0.0075 18.2 1.5 1 23 132 154 132 154 0.99
3 21 0.0023 0.64 12.1 3.3 1 23 160 182 160 182 0.98
4 21 5.2e-05 0.014 17.3 1.8 1 22 188 209 188 209 0.96
5 21 0.0017 0.47 12.5 1.2 1 23 216 238 216 238 0.98
6 21 8.6e-05 0.024 16.6 0.4 1 23 244 266 244 266 0.98
7 21 1.2e-06 0.00033 22.4 1.9 1 23 272 294 272 294 0.99
8 21 5.3e-06 0.0015 20.4 4.3 1 23 300 322 300 322 0.98
9 21 0.0011 0.3 13.1 3.9 1 23 328 350 328 350 0.98
10 21 5.9e-05 0.016 17.1 1.7 1 23 356 378 356 378 0.98
11 21 2.1e-05 0.0058 18.5 1.7 1 23 384 406 384 406 0.98
12 21 3.8e-06 0.0011 20.8 2.4 1 23 412 434 412 434 0.99
13 21 0.0002 0.055 15.5 4.9 1 23 440 462 440 462 0.98
14 21 0.0013 0.35 12.9 2.3 1 23 468 490 468 490 0.97
15 21 7.9e-06 0.0022 19.9 1.2 1 23 496 518 496 518 0.99
16 21 0.00044 0.12 14.4 2.8 1 23 524 546 524 546 0.98
17 21 3.4e-05 0.0095 17.8 2.6 1 23 552 574 552 574 0.99
18 21 0.0004 0.11 14.5 1.4 1 23 580 602 580 602 0.98
19 21 1.5e-07 4.2e-05 25.3 2.0 1 23 608 630 608 630 0.99
20 21 9.5e-05 0.026 16.5 4.8 1 23 636 658 636 658 0.99
21 21 2.4e-05 0.0066 18.3 6.8 1 23 664 686 664 686 0.97

Sequence Information

Coding Sequence
ATGTTTGCAAAGAATGTAAGCAGCGCAGAATGCATTGAGGATCGTCGATTATTTAATCTGCAAAATAATGGAGAAGGAGACAAAAATTCTGATGATATAGACAAGCAAATGGTGACTCATGGAACTTACTACGGTATCGATAAAAATGACACAATAAATGCAGATAATAAACAAGATAATCATacagattataaaaataataatcatacaaTTCCTAATATTAATTACAAGACAACAAATTTGCTTTTAGACAAATCGACTCAATGTGATTCTAGATTTATTGATCAATCAGATTTTTTACCATCTACATATCATTGTGCCCATTGTAAGTCCACATTTAAAAGTAAGTTGAAACTGAAGAAccatttaaaaatacacatgGGAGAACATCCATACCAGTGTAAACATTGTAAGGTGGGATTTACTCAAATTGGAAAATTGAACATACATCTAAGAATTCACACAGGTGAACGTCCATACCAGTGTGAATGTTGTAAGGCAAGATTTGTTTCAAATAGTAAATTGAAAGAACATGTTAAAACACACTCGGGGGAACGTCCATACGAGTGTGTTTATTGTCACGCCAGATTtaataaaaaggaatatttAAACAGACATATAAGACGTTACATGGGAAAACATACATACGAGTGTAGACGTTGTCAGGCAAAATTTGATCAAATGGAACAATTGAAAGATCATAGAAAAATACACATAGGGGAACGTCCATACCCTTGTGAATATTGTCAAGCCAAATTTGCTAGAAAGGACCGTTTGGAACTTCATGTAAAATCACACACAGGGGAACGTCCATACCAGTGTGAACATTGCCAGGCCAGATTTGTTTCAAATAGTAATTTGAAAgatcatttaaaaatacatacaggGGAACGTCCACATCAGTGTGATTATTGTCAGGCTAGATTTACTCGAAAGGGAGATTTAAACAGACATAGAAAACGTCACATGGGAGAACATACATTCCAGTGTAGACGTTGCCAGGCCAAATTTAATCAACTAGAACATTTGAAAGATCATAGAAAAATACACATAGGGGAACGTCCATACCATTGTGAATATTGTCAAGCCAGATTTCCTAGAAAGGACCGTTTGGAAATTCACATAAAATCACACACAGGGGAACGTCCATACCAGTGCGAACACTGCCAGGCTAGAtttgtttcaaataataatttgagaGAACATGTAAAATTACACATGGGGGAACGTCCATACCAATGTGATCATTGTCAGGCCAGATTTATTCGAAAGGGAGATGTAAAGAGACATATAAGACGTCACATTGGAGAACATCCATACCAGTGTAAACGTTGTCAGGCCAAATTTAATCAAAAGGAACATTTGAAAGatcataaaaaaatacacaaaggAGAACGTCCATATCATTGTGAATATTGTCAAGCCAGATTTGTTAGAAAGACACGTTTGGAAGATCATGTAAAATTACACACAGGGGAATGTCCATACCAGTGTGAATATTGTCAGGCCAAATTTATTCAAAAGGGAAAATTGAAAgatcatatacaaaaacacatGGGAGAACTTCCATACCATTGTGACTATTGTCAGGCCAAATATACTAAAAAGGGATATTTGAACGATCATCTTAAAATACACATGAGAGAACGTCCATATCAGTGTGAACATTGTCATGCTGGATTTACTCGAATTGGAAAATTGAACATACATCTAAGAAGTCACACAGGGGAACGTCCATACCAGTGTGAATGTTGTCAGGCCAGATTTGCTTCAAATAGTAATTTAACAGAACATGTAAAAATACACACGGGGGAACGTCCATACCAATGTGATTACTGTCAGATTAACTTTACTCGAAAGGGAGATTTAAAGAGACATATAAAACGTCACATGGGAGAACATATATACCAGTGTAAACGTTGCCAAGCCAAATTTAATCAAAAGGAACATTTAAAAGATCATAGAAAAATACACGCAGGAGAACGTCCACACCATTGTGAATATTGTCAAGCCACGTTTACTCGAAAAGGACATTTAAATAGTCATATGAAAATACACATGAGAGATTCCCAGGGTGGTGTGAACATTGTAAACCCAGATGTACTCTGA
Protein Sequence
MFAKNVSSAECIEDRRLFNLQNNGEGDKNSDDIDKQMVTHGTYYGIDKNDTINADNKQDNHTDYKNNNHTIPNINYKTTNLLLDKSTQCDSRFIDQSDFLPSTYHCAHCKSTFKSKLKLKNHLKIHMGEHPYQCKHCKVGFTQIGKLNIHLRIHTGERPYQCECCKARFVSNSKLKEHVKTHSGERPYECVYCHARFNKKEYLNRHIRRYMGKHTYECRRCQAKFDQMEQLKDHRKIHIGERPYPCEYCQAKFARKDRLELHVKSHTGERPYQCEHCQARFVSNSNLKDHLKIHTGERPHQCDYCQARFTRKGDLNRHRKRHMGEHTFQCRRCQAKFNQLEHLKDHRKIHIGERPYHCEYCQARFPRKDRLEIHIKSHTGERPYQCEHCQARFVSNNNLREHVKLHMGERPYQCDHCQARFIRKGDVKRHIRRHIGEHPYQCKRCQAKFNQKEHLKDHKKIHKGERPYHCEYCQARFVRKTRLEDHVKLHTGECPYQCEYCQAKFIQKGKLKDHIQKHMGELPYHCDYCQAKYTKKGYLNDHLKIHMRERPYQCEHCHAGFTRIGKLNIHLRSHTGERPYQCECCQARFASNSNLTEHVKIHTGERPYQCDYCQINFTRKGDLKRHIKRHMGEHIYQCKRCQAKFNQKEHLKDHRKIHAGERPHHCEYCQATFTRKGHLNSHMKIHMRDSQGGVNIVNPDVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-