Ccas006757.1
Basic Information
- Insect
- Coronaproctus castanopsis
- Gene Symbol
- -
- Assembly
- GCA_032883995.1
- Location
- CM065052.1:98940077-98941903[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-10 3.2e-07 31.4 0.0 1 43 6 47 6 49 0.92 2 2 7.2 2.1e+04 -3.2 0.0 17 32 489 504 488 506 0.83
Sequence Information
- Coding Sequence
- ATGTCTAAGAGGTATACACAAGATCGTTTGGAAAAAGCACTATTTGATGTGGCACACGGTATGCCGTATAGGACAGCAGCCAAAAAGTATGATGTTCCAAAAACcacattaaaatataagtttgaaggaaaaattaaaaagagtaCTAAAGGACCTGAAACAAATTTTCCAGTCGAATACGAAGATATGTTAGTTCAGTGGATAAAAACATGTAAAGGATTGGGTTTCCCTGTATCGAAAGAACAACTCTTAGTTAGCGCTGAGAAGCTGATAAGCGAATCTGGACTCACTACCAGATTTAAGAACAACAGGCCGGGTGTAAAATGGGTAAGACTATTTATGAAAAGGCATCCAGATATAGTTATTCGTATGTCTCAGAACATAACAACCGTTAGATACAAGGTAAAAAAAGATGACCTGGAAAAATGGTTTTATGAAGTTCagaagtatatttatgataataatataggagaaattttcaaaaatccaatgcgtatatataattgTGACGAAACGGCTTTTTTTATGTCTCCAAAAGGCAAAAAAGTATTATCGTGTAAAGGTGATAAGACGGTATACAGTGTAAGCGGTAATGATGAAAAGGAAAATCTTACAGTATTGTTCGGTGGAAATGCAGCTGGAACTATTATTCCTCctatgataatatttaaatacgataGAATACCTTCTAATATAGCTGCAAGTATTCCAGCTGACTGGGGAGTTGGAAAGTCTGAGTCTGGGTGGATGTGCGCAAATACTTTTTACGAATACGttactaatatatttaatccgtggttgaataaaaatgaaatagaaaaaccGATTGCTCTTTTCATTGATGGTCACACATCACATTTAACATATCACTTGTCAAAATATTGTTCGGAAAAtggtattattataatagcACTACCGCCAAATGCAACGCACATAATTCAACCCATGGATGTCGCAGACTTTCACGTCTTAAAATTGAAATGGAAGGACGCTGTGTTTAATTGGAGAATGGAGCATAATGGAGAGAAAATACGAAAAGATTGTTTTGCtccgatattaaataaaattatacacgaaCTGAAATCAGAAACAATCATAAATGGTTTCCGAGCATGCGGCTTATTTCCATTCGATTTAAAGAATCTTGCGTTTGATTTCGATATTAATGAAAACACAGCTGAAGCCGTTTGTAATACACCATCTAATAcctcaaatcaaattaaaaatacaaggcctttaattgaattattagaAAGTAAAATTGGAAATGAGAAgttgaatttcttcagaaataatCGATTCTCCATTGAAGATACTTCGCTCTATGAAATTTGGACTGAACtacgaaaagaaataaaaaacgatgAAGACAATAATacggaaatttcaaaaatatcagAAATTGAAGATTATCTTCCTTTTTCAGCTGAAACATGTGGAAGCAAACAACATGGTATTATTGAAACATCAATAACACCAGCAAGTGAACAACATGATATTGCCGAAACGTCAGTATCAGCAGCTGGAAGTGAACAACATGTTATCGCTGAAACATCAACAACAGAATGTGAACAACATGTTTCAGGTTTCATTGGAACATCAAAAAATGGTGAACAAACTATTCCATCCCCTTTTAAAAGAGCATTATTTTGGCCGGAACCAGtagtaaaaaaatgtactaaaaaaattaaagaaaagattCCTAGCGTCATCATATCGGAAGCATGGCAAAACTACCatgttaataaagaaaagaaaaagttggaAATTGAAACTAAAAAGGTGGAAATGAGAAAAAAACGGGAAGAGCAAGAAAGAAGGCGGTAA
- Protein Sequence
- MSKRYTQDRLEKALFDVAHGMPYRTAAKKYDVPKTTLKYKFEGKIKKSTKGPETNFPVEYEDMLVQWIKTCKGLGFPVSKEQLLVSAEKLISESGLTTRFKNNRPGVKWVRLFMKRHPDIVIRMSQNITTVRYKVKKDDLEKWFYEVQKYIYDNNIGEIFKNPMRIYNCDETAFFMSPKGKKVLSCKGDKTVYSVSGNDEKENLTVLFGGNAAGTIIPPMIIFKYDRIPSNIAASIPADWGVGKSESGWMCANTFYEYVTNIFNPWLNKNEIEKPIALFIDGHTSHLTYHLSKYCSENGIIIIALPPNATHIIQPMDVADFHVLKLKWKDAVFNWRMEHNGEKIRKDCFAPILNKIIHELKSETIINGFRACGLFPFDLKNLAFDFDINENTAEAVCNTPSNTSNQIKNTRPLIELLESKIGNEKLNFFRNNRFSIEDTSLYEIWTELRKEIKNDEDNNTEISKISEIEDYLPFSAETCGSKQHGIIETSITPASEQHDIAETSVSAAGSEQHVIAETSTTECEQHVSGFIGTSKNGEQTIPSPFKRALFWPEPVVKKCTKKIKEKIPSVIISEAWQNYHVNKEKKKLEIETKKVEMRKKREEQERRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00372022;
- 90% Identity
- iTF_00372022; iTF_00372021;
- 80% Identity
- -