Ccas017946.1
Basic Information
- Insect
- Coronaproctus castanopsis
- Gene Symbol
- -
- Assembly
- GCA_032883995.1
- Location
- CM065052.1:257832866-257844038[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.7e-13 2.3e-09 38.3 0.0 3 39 79 116 77 120 0.91 2 4 9.2e-13 2.7e-09 38.1 0.1 2 38 132 168 131 173 0.89 3 4 3.6e-20 1.1e-16 61.8 0.0 2 45 187 231 186 231 0.98 4 4 6.2e-17 1.8e-13 51.4 0.0 1 40 238 278 238 281 0.95
Sequence Information
- Coding Sequence
- ATGTTTCCGTTAGCAAGAACAAAGATATTAGTGCAAACGGACAAATATATTGTAGCTCTAACTGAGGAAATAATAGTGATACAAAAAagcATAAACGATGACGAGCACACAATGGACACAATGATGATTACGCCGGAATTACTTGGTCTTATCCCATCAAATTCATCGGGTCCACCTTCCGAGGTCGGCAGCGATAGTGAAAAGTGTTCTCCGTTATCGAAATCGTGGAATCAAGACGATATGGATATGGCTTTGGATGCTTTACGAAATAGACAAATGAGTTTGACGAAAGCTTCGATTACGTACGGCATACCATCTACTACGCTGTGGCAACGAGCCCATAGGTTAGGCATTGATACACCGAAAAAAGATGGTCCTTCAAAATCTTGGAATGAAGAAGTATTGAATGCCGCTTTGGAAGCCCTAAGAACCGGTACTATATCTGCAAATAAGGCCAGCAAGGCTTACGGTATTCCGAGCAGTACGTTGTACAAAATTGCACGAAAAGAAGGAATTCGCTTGGCAGCTCCTTTTAACGCTGCGCCCACTTCTTGGAATCCGGAAGATTTAGAACGTGCTTTAGAAGCCATACGAAATGGTCAAATATCGGTACAACGAGCTGCAACTGAATACGGTATTCCTTCTGGTACTTTATACGGTAGATGTAAAAGAGAGAAAATCGAACTATCCAGAAGTAATCCAACACCTTGGTCGGAAGATGCCATGACTGAAGCATTGGAAACAGTTAGATTGGGTCACATGAGTATCAATCAGGCTGCGATACACTACAATTTGCCATACTCTTCCTTATACGGACGGTTTAAAAGAGGTAAATTCGAAAATGATCCGTTAAGCCATACCGATGATACTACTTCGGACGTTCACAATAATACATCGACACATTCTAGTACAATTGTGACTGGAACACAGACGATTACTTCGCAGCAAACGGCTCAACAATCGTCGCATCATCAACAAATTCAGCAACAGCTTGATGCTCAACAACAGCAACAATCGACTTCGCAACAACAAACAGAGACAGCTCAAATTCCAAGCAGTCCGAATATACAATCGCAATTGATGCTGTTACAGTACCAACATACTCCTTCACCTGTACCGACAAGTCATATCCCTATATATCAGTCAAGTAcaacgaattaa
- Protein Sequence
- MFPLARTKILVQTDKYIVALTEEIIVIQKSINDDEHTMDTMMITPELLGLIPSNSSGPPSEVGSDSEKCSPLSKSWNQDDMDMALDALRNRQMSLTKASITYGIPSTTLWQRAHRLGIDTPKKDGPSKSWNEEVLNAALEALRTGTISANKASKAYGIPSSTLYKIARKEGIRLAAPFNAAPTSWNPEDLERALEAIRNGQISVQRAATEYGIPSGTLYGRCKREKIELSRSNPTPWSEDAMTEALETVRLGHMSINQAAIHYNLPYSSLYGRFKRGKFENDPLSHTDDTTSDVHNNTSTHSSTIVTGTQTITSQQTAQQSSHHQQIQQQLDAQQQQQSTSQQQTETAQIPSSPNIQSQLMLLQYQHTPSPVPTSHIPIYQSSTTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -