Cimp109211.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821521.1:200172643-200180327[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0018 0.54 13.5 0.9 1 23 123 145 123 145 0.98 2 13 2.3e-05 0.0071 19.4 0.3 3 23 378 398 376 398 0.97 3 13 2 6e+02 3.9 1.8 1 23 445 468 445 468 0.91 4 13 0.0018 0.54 13.5 3.1 2 23 708 729 707 729 0.96 5 13 0.18 55 7.2 3.2 1 23 735 758 735 758 0.96 6 13 0.87 2.7e+02 5.0 0.1 2 23 795 817 794 817 0.93 7 13 0.017 5.2 10.4 0.5 1 23 831 854 831 854 0.97 8 13 0.61 1.9e+02 5.5 4.0 1 21 994 1014 994 1015 0.93 9 13 0.04 12 9.3 9.4 1 23 1034 1056 1034 1056 0.98 10 13 9.4e-05 0.029 17.5 0.5 2 23 1062 1083 1061 1083 0.97 11 13 0.0034 1 12.6 5.2 1 23 1089 1112 1089 1112 0.94 12 13 0.0021 0.65 13.3 2.2 2 22 1118 1140 1117 1141 0.87 13 13 1.6 5e+02 4.2 4.8 1 19 1147 1165 1147 1170 0.93
Sequence Information
- Coding Sequence
- ATGGTTGGCAAAAATTGCGTGCAGGAATACACCTTGGTGTGTCGAACTTGTCTGCAGTCTAATGTGGAAATGATTTATTTGAACGCGCTCATCAATGATAATCTACAAAAAGAGGATTGCAAAATTTCTTATATGGATTGTTTAAGGTCGTGCGTGCAATTGGAGGAGATTGAGGAAGAGATGCCGTCAAGAATATGTTTAGAATGTGCTTCAGCCTTGCAGGTGTCTTATTGGTTTATGAAAAATGCAAGCCAAGCTCAGGAGttgttaaaaaacaaattgaGAGAGATACGCTTTAAGAAAGAGCAAATAGAAATGGAGGCGTGTGGCATGGTTTCtgtcgaagaaattaaaaaaaacaaaagatataGATGTAAAATTTGCAATGTTAAGGTAGAAACTAAAAGATCGCTCAAGGAACATGTCAAATTACATTTAGACATTATTGTATATAATTGTCAATTGTGCAGCTTTGAAAGCCACACACGCAATTATTTAAGTGAACACTATAACGAAGTGCACGGCATAGAAGCGTCCAAGGAACAATTGAAACCTAAAACTAAAATGTCCATATCCTCTTCACCGGCCATTATCAAAAATGAAGATTATATGATGcccattaaaaatgaatattttcaaGTGTTGcctgaagaaaacaaacaaacaacattttGTCATACATTTAAAACTGAAGCCATTGAGTCGACTAATTCGTCATATAGTAAGCCTATGGAGGCTTCTACTGATTTCACTTTGGATCAGCAGCAAAATTTCAATTCGTTTAATACTGTTACAAATGATGTTAGTATAGGCAATGAATTTATTGTTATGGCTGATGGCAGAGTTGAAGAACTTATGGGTAAAGGCGTTGTCATTGAGTATATTAATGCTGCCGATGATAATGAATTAACTTCAGAAAATAATGGTATAGTTCTAGATAATATGATGCAAGTTCAAAATACAGATAATACGAATATGCTTGTAACGCAAAATGATATTATACAAATGGATGTAGATGATATGATAATAGAGGATCCAGTTCAGAGCCCAGAAGAAATGCAAGaaatcccTCCAATTGTGGACGAAGAAATGATACCTGTCACAATTATAAGATCGAACAaaaatatcatatgtaaaatttgTACCAAAGATTTCAGCATCCAAGATGAATTAAAGAATCATATGCTAACGCACAATGAAATTCCCCATTTCTTCTGTGATCAATGTAAATTTTATACCTTCTTCAAAATTGATCTACATCAACattataaaagtaaacataatcTACATCCAACAAGTAAACAATtacaaccaaaaaataaacaacatataTTTAAATGTGATTTATGTATGCATGAATTCGAATCTATGATCGATTTGAAAAGacataatttaaataaacataaaatcgaAGGCTCCGCATATCGTAGTACTGttcaatcaaaaagaaaaataattccagCAGCGACTGCAAAGAAAACGAAAATCAAACCCATAGAACCAACCACACCAGACTATCCAAATGGTTTAAATTGTAGGAAATGCAATGAACTATTCTATTGGCGTAATAAACTCTATGAACATTATAAACTACACAATGCCGCAGAGGCAGCCTTAAAGCAAGAGAATGAAATaaacaaagttaaaaataaacaaccaCAACCATTGAAATCTCATAAAACTATTAAAGCGCCACAACAAATGCCGACTCATACCAACGTCGAACAATCTTCGCTAGAGCAAATGAATACACAAACCACAGAGTTTTCCAGTTTAGATCAGTCTTTAAGCCTGacccaaaataataataataacaataataatacatcAAACAATGTTATGGCACCGCTAACACCATCCTCCAGCTCAACATATACTTTACCTTCGGATGCTATACCGCAAATTGTAGAAACTGATCAGACTATAGATAATAATATGGATTTTGATTTCAATGGTGATGCTTTATTTGAAGACTTTGATGATGATGTTGACGTCGAAAATGAATCTGATGAAAATGATCATGACATGCGTAATGTTTTGCTAACGTCCGACGATGATTTGGAGGATATGCAAAAGGAACAAAACAATCCCCAAAATAACGACGATCCACCAACTGTATCGTATTGTGCTCATTGTCAGAAGAATTTCcaaagtcaatatcaatttgaaAATCATATGTTTGTTCATCGAGAACTGGCTCCTTATCGTTGTGAAATGTGTACAAATCTGTATAATACAAAACGTTGTTTAATACGCCATTATAAAGCGGTGCATAAGCAAATACCTTCAAGAGATATGATACAAGCCAAAGGTGATAAAGtaTGTGTAGATAAAACTCCAGTTCGAGAGTTAATTATAGCAGAAAATGAATCCCTGACATTAATGTGTGCAAAATGTCCTTATGAAACCAAGGATTTACCCAACATACAATCTCATTTAAATGCTAGTCACAGCCTTAATGATGaATGTTACATCATAAAAAAACTTCCCTACGAATGTCCTCGATGTATTCGTTCATTTGCTTCTAAAACTAAAGTAATTCGTCATTTAGAACGAAATCATAGTTCAACGCCCATTAATGAAAATCAATTGCGATCAGCCTACACACCATCATCCACATCGACAACCACAAGCGATCATGTAAATACGATGAATAACGAAACTAGTGAATCGAGTGTTAGATGTGCAGCTGGATACTTTGATGAGTACCTTAAACaagaacaacaagaacaatataataAAACAGCCTCGGCATCTTACAGAATAAGAAATGAACTTTCAATTGAAAATGCCGTAGCACCCAACATTGTTATGACCAACTTCCAGAACGATAAAAATACAAACTCCTCAACATCTATGACTTATCATGAAATCATCTCGACACAAGACTTAGATGTTGATGAGCACGATCTAGACGAAGAGTATGAAGAAGACGAACTGGACTACGATCAAGAAGTAGTAGAAGAAGAGCAAGCTCTATTTAAATGTAAAGTATGCCATTTGACTTGCTATAACCTAGAAACTTTTAATGAACATGGTAAACGTCTGGAATGTCGCAAAAAAAGGCAAATCACCGTTGCCACCCACCACAAAGGACTGTTCGAATGTGAAATATGTCACTGCAGTTATAAAACCATGTATTTTTTGAAACACCATTTGAAACGTCATATAGGCAGAAAAATTCGTTGTCCCCAATGTCCAAAAACATTTGTGAATCAACTTGAATTAGTGAGTCATCAGCATGTTCACAGTGGTGAAAAACCACATAAATGTGATCAATGTCCTAAATCGTTTGGTTATGTCCACCATTTGAAACGTCACAAAGACATTATACACAAAGGTAAACGTCATGCATGTACTGAACCGAATTGTAATCGAAAATTTACCACCTTATCCCATTTGAAAGTTCATATTTGGACTCACAATGGTATCGTGCCATATAAGTGTCAGTTTTGCGAGAGATTATTTAAGAAGAGGGTTTTGCTACGTGATCATTGCTTTAAGATGCATAATATCAGTTTGACCGAAGAAGAAATGGCTAAAATTTTTCGCAATAGCTTAGGTTATACAAATCCTCATGATTTTACAGTGGCGATAACAAATGGTAAAATGTTGAGACGTGCTGATTTGGAAACTATGGGTGCTTCTGGTGTTATAAAATCATCATTTAAATAG
- Protein Sequence
- MVGKNCVQEYTLVCRTCLQSNVEMIYLNALINDNLQKEDCKISYMDCLRSCVQLEEIEEEMPSRICLECASALQVSYWFMKNASQAQELLKNKLREIRFKKEQIEMEACGMVSVEEIKKNKRYRCKICNVKVETKRSLKEHVKLHLDIIVYNCQLCSFESHTRNYLSEHYNEVHGIEASKEQLKPKTKMSISSSPAIIKNEDYMMPIKNEYFQVLPEENKQTTFCHTFKTEAIESTNSSYSKPMEASTDFTLDQQQNFNSFNTVTNDVSIGNEFIVMADGRVEELMGKGVVIEYINAADDNELTSENNGIVLDNMMQVQNTDNTNMLVTQNDIIQMDVDDMIIEDPVQSPEEMQEIPPIVDEEMIPVTIIRSNKNIICKICTKDFSIQDELKNHMLTHNEIPHFFCDQCKFYTFFKIDLHQHYKSKHNLHPTSKQLQPKNKQHIFKCDLCMHEFESMIDLKRHNLNKHKIEGSAYRSTVQSKRKIIPAATAKKTKIKPIEPTTPDYPNGLNCRKCNELFYWRNKLYEHYKLHNAAEAALKQENEINKVKNKQPQPLKSHKTIKAPQQMPTHTNVEQSSLEQMNTQTTEFSSLDQSLSLTQNNNNNNNNTSNNVMAPLTPSSSSTYTLPSDAIPQIVETDQTIDNNMDFDFNGDALFEDFDDDVDVENESDENDHDMRNVLLTSDDDLEDMQKEQNNPQNNDDPPTVSYCAHCQKNFQSQYQFENHMFVHRELAPYRCEMCTNLYNTKRCLIRHYKAVHKQIPSRDMIQAKGDKVCVDKTPVRELIIAENESLTLMCAKCPYETKDLPNIQSHLNASHSLNDECYIIKKLPYECPRCIRSFASKTKVIRHLERNHSSTPINENQLRSAYTPSSTSTTTSDHVNTMNNETSESSVRCAAGYFDEYLKQEQQEQYNKTASASYRIRNELSIENAVAPNIVMTNFQNDKNTNSSTSMTYHEIISTQDLDVDEHDLDEEYEEDELDYDQEVVEEEQALFKCKVCHLTCYNLETFNEHGKRLECRKKRQITVATHHKGLFECEICHCSYKTMYFLKHHLKRHIGRKIRCPQCPKTFVNQLELVSHQHVHSGEKPHKCDQCPKSFGYVHHLKRHKDIIHKGKRHACTEPNCNRKFTTLSHLKVHIWTHNGIVPYKCQFCERLFKKRVLLRDHCFKMHNISLTEEEMAKIFRNSLGYTNPHDFTVAITNGKMLRRADLETMGASGVIKSSFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -