Basic Information

Insect: Cordilura impudica
Gene Symbol: -
Assembly: GCA_963682025.1
Location: OY821517.1:347190406-347192483[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 6.8e-05 0.021 18.0 0.3 1 23 455 477 455 477 0.98

2 5 3e-06 0.00091 22.2 2.8 1 23 483 505 483 505 0.98

3 5 6.4e-06 0.0019 21.2 3.0 1 23 511 533 511 533 0.99

4 5 1.1e-05 0.0032 20.5 3.0 1 23 539 561 539 561 0.98

5 5 0.00018 0.056 16.6 2.3 1 23 567 591 567 591 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	6.8e-05	0.021	18.0	0.3	1	23	455	477	455	477	0.98
2	5	3e-06	0.00091	22.2	2.8	1	23	483	505	483	505	0.98
3	5	6.4e-06	0.0019	21.2	3.0	1	23	511	533	511	533	0.99
4	5	1.1e-05	0.0032	20.5	3.0	1	23	539	561	539	561	0.98
5	5	0.00018	0.056	16.6	2.3	1	23	567	591	567	591	0.93

Sequence Information

Coding Sequence: ATGGAAATAAGCATAACATGGAATATATGTAGAGTTTGTCTACAGGAAGAACAAAAGAATGCTGGAGGAGAACAAATgaagcaaatattttgtgaaaatagtAAAATTGCACAACATATTTATGAGTGCTCCGGTATATGGGTGAAACCGAATGATAGTTTACCCCAAAAAATTTGTCGAAAATGTTTTGGTGTTTTGAAATATGCAGTAAAGTTTCGTAAAACTTGCAAGGAGTCAGATAATTATTTGCAATCTGTATTACAACGTACCAAATCTGCAAGTATTCTCTTTATACCCGAGAGATCTACAGATTTGGAAGATGAAACAATGACTGATGATCCTTATAgcaatgatgatggtgatgaagaAGAAAGCGAAACTCAAGCCACTAAATTAGAAGATGCAGAAGAAGAATTTGTAAATCTGAAAACAGTAAAATGCAAAAACAGTAAACTTTTAACTAAATCTAAGAAACCAAAATCTTTAGACGCTGCCAATCCCGCTGGTatggttataacaaaagaaaaagagaCAAAGAGTGACTACGCCGTAGAATATGAGCATAAAACTGACAATGAGAGTAATATTCATCATGATAAAGTTCGATTGGAAGAGGAAATTGTAGAAAATCCTGAAGATGTGATTGATCCATTGTTTAGTGACAATACATCAGAAAATACACCATCATCTAAACGTATTATTGCAGAAGGCGAACAGGTTGAAGAAACAGACGATCATGAAAATTCTAACAAAGACTTAAATAAAGAATCAGCCATAAGGGAATTCTATGCTAACGATAGTTATACGAAATTGTCAAAtgagcatcttataaaaaaactttttgtagtTGATTCGGATCATGATGAAATACCGGATACAGAAGAATCTGATATACACGATTTAAGAGAAGAAAATGAAGACTTATATTATATACTCAAAGGTATTAAAAATAAAGATCCTCCTACAAATACTGATAGAATTCCGACTTACGAATTTTCACATCGGAATGAAGAACATATTGTGGAAATTGATGAACAGGATGAAAAAGATCATATGGCAGATGTGGAATTCATACCAATTGACGAGGAAGAAGAAGTTGACGCACAAGATATAAGCATAACAATGCAGTTAGAAGATAATCAATCACAAGTAACCTCCACGGTGGTGACCAAAGAGGATGATAGCTTTATTgaagaaaattcaaatttttccactgaaACAAATGACTTAACATATGAATATGTAATAGATGACTATGGTATTGAGGAGATTTCAATACAATCGAATAAACCAATTTCAAAAGCCATTGAGCGGCAGGGGGGTCGTAAGAGGAAATCTTCAAGATCTACAGAATCACAATCTTATGTTTGTGATTTGTGtggtaataattttaataatcgtCAGCTTATGAATGCCCATATGAAAGTACATCGCCAGGAAAAGAATCATGAATGCGAAATATGTTTTAAACGTTTTATAACAGCCTGTAATTTACAGGCACACATGCGCATTCATACTGGTGAAAAACCATTTAAGTGTCAATACTGTGGTCGACGCTTCAATGATCGCAGTTCTAACTTAAGACATGAAAGAACACATACCAATGAAAAACCCTTCCATTGTGAACATTGCGGTAAAACTTTTGCTTTGTCAACAACACTGCAGGCTCATTTAAAGGTTCATACCGGAGAGAGATCGTACAGtTGTGAAACTTGTGCTAAATCCTTTAAACTACCACATCAGTTAAAAGCCCATCGAAAAACCACTCTACATAAAGCtgtagaaaaaatgaaaaataaaataggaaTTGTGTAA
Protein Sequence: MEISITWNICRVCLQEEQKNAGGEQMKQIFCENSKIAQHIYECSGIWVKPNDSLPQKICRKCFGVLKYAVKFRKTCKESDNYLQSVLQRTKSASILFIPERSTDLEDETMTDDPYSNDDGDEEESETQATKLEDAEEEFVNLKTVKCKNSKLLTKSKKPKSLDAANPAGMVITKEKETKSDYAVEYEHKTDNESNIHHDKVRLEEEIVENPEDVIDPLFSDNTSENTPSSKRIIAEGEQVEETDDHENSNKDLNKESAIREFYANDSYTKLSNEHLIKKLFVVDSDHDEIPDTEESDIHDLREENEDLYYILKGIKNKDPPTNTDRIPTYEFSHRNEEHIVEIDEQDEKDHMADVEFIPIDEEEEVDAQDISITMQLEDNQSQVTSTVVTKEDDSFIEENSNFSTETNDLTYEYVIDDYGIEEISIQSNKPISKAIERQGGRKRKSSRSTESQSYVCDLCGNNFNNRQLMNAHMKVHRQEKNHECEICFKRFITACNLQAHMRIHTGEKPFKCQYCGRRFNDRSSNLRHERTHTNEKPFHCEHCGKTFALSTTLQAHLKVHTGERSYSCETCAKSFKLPHQLKAHRKTTLHKAVEKMKNKIGIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -