Cimp081875.2
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821520.1:99648363-99651613[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.012 3.5 11.0 1.5 2 23 138 160 137 160 0.94 2 13 4.4 1.4e+03 2.8 5.2 6 23 170 187 170 188 0.95 3 13 1.3e-05 0.0039 20.3 1.2 1 23 197 220 197 220 0.96 4 13 7.9e-05 0.024 17.8 0.2 1 23 231 254 231 254 0.95 5 13 2.6e-05 0.0081 19.3 0.5 1 23 501 524 501 524 0.95 6 13 1.8 5.4e+02 4.1 0.1 6 23 629 646 629 646 0.98 7 13 0.28 86 6.6 0.2 1 23 652 675 652 675 0.96 8 13 0.0043 1.3 12.3 1.0 3 23 757 778 755 778 0.91 9 13 0.018 5.6 10.3 3.1 1 23 813 836 813 836 0.92 10 13 1.1e-05 0.0034 20.4 1.2 1 23 844 867 844 867 0.96 11 13 0.00064 0.2 14.9 3.2 3 23 877 898 875 898 0.96 12 13 0.021 6.4 10.1 0.4 3 19 976 992 975 994 0.95 13 13 6.1e-06 0.0019 21.3 2.6 1 23 1030 1053 1030 1053 0.98
Sequence Information
- Coding Sequence
- ATGCCTCCAACAACATTGTGCAGTTTATGTATATCCACCTGCAATACATTTAAATGTCTGTACAATGACGATGGACAATTAAGTGAAGTATATTATATGGTAGCCAAATATTTTGATCCGATGtTTTTACGACCAGGAAAATATAGTACATCTGTTATATGTACAGAATGTTGGCAACATATTACAGATTTCCATACATTTCAACAAACGGTAATTAATACACAATACCAACAAGAATATATTGAACCGATTGTACAACTTACCAAATTGGAGGAGTTAAATGAAAGCGAAAAAATAAGTCTGATGCAACAAATCGATAAAATTCGTCTAAAAGAGACAACAGTAACTTTTGATTATGATAGTGAAAGAGTGAAAAATGACGATTTTATAGCAAAATGCAAGGGAATGTTGGAATGCGTGGCGTGTCATGAAATGTTTGAAACGTATTCTTTGTTAAGAAATCATTTCCGTATGAAACATCCCGAAAAAGAGTGGTATATAAACTGctgtaaacataaattttataagagACAAAAGCTAATGGCACATATTCGCCAACACCACAATCGAACCAAAAAACCTGGAAAATATCAATGCGAATTGTGTACAGAATCATTTTCTCGAAATTCATATCTTAGCCGACATAATCGCCTTGTCCATAATCGCCTTGACCATACAGATCAGCAAGGCTATAAATGTGATATATGTGGTTTACCATTTGTCCTAGCTTTCAGTTTAAAAAAACACATGACTTTAAATCATAATCCAAAATCTGAATTTCAGTCAAACTTGGAAAAACATAGGGAACAGGTTCATTCAAATCTTGAGATACAAGTTCCTTTGGTTAAAATTGAACCAGCCGAAGAAGGTTTATGTGCTGGAAAAGAAAGTTTAGCTGAAACTAATTCAATGGTTTCCATTCATAATGATGACAAAACTGTTGAAACCTTAGAAAATGAAATATCGTCAAATGTTGAATTAAGAACTTTTACAAAAGAACAGAAATCGACAGTAGAACAATTTGGTGATAATGTTGAAATTTATAAACACAAATTAGAAGAAACGTTAGGAAATGATAATCAAATAATAGATAACACAAAACCTAGTCAATTTCTGTTGAGTTCTGAATACccaaaaaatgaaatacaaaagccACCTTTAGATATTGTTGATATTAAAGATGAACTTCCGTTAGACCATGACAATGATTCAAATAATGAACCATCCGAGCCCAAAACTGCTCCATTGAAtataaaaattagatattctaaaatacataaagaaataaaagaaatggaACATGATGCTTTTATAGCTAAACACAAAGGAGACCTAGAATGTCCTTTGTGCAAAGGATTACATGCAAACTACTCCTTGCTCAGAGAACATTTTCGCGATGAACACACTGGCGAAAAATGTTACATAGTTTGTTGCCAACTTAAACTTAACAGTCGTTATCGTTTGTTTGAACATCTCCAATTTCATATCAACCCAAAGGCGTATGAATGTGATGTGTGTggcaaatgttttaaaaacacTGGTGCCTTAGTGGTGCACAAGCAACTGGTGCACATTGATAAACAGTCATCAAATCATCACTATTTATGTGGCTGCAAGAAATCTAAAGAACTGTATGCTAAATATGATACAACGATACCTAAAGAAGAAGGGCGCGAAAATGTATCTCGAGATTTTATAAATCAGAAATACTATAGTCTGCTATGTTGTCAACTAAAACAACGAATGTTAGGAAATGATGCTACCATAGCTAAATGGAATAGCGAGTTGTTTTGTAGGCTATGTGGTGCGAAATTTTCTTGTTACTCCTTGTTGCGTGATCACTTCTGCAGCAATCATCCACAAGAGAACTTTTACATCAATTGCTGTCAACGAAAATTTTACAAGATTGTAGATTTCTTAGACCACATACGTATTCACTTGCCACCCAATGATTTCAAATGTGAAATATGCAACGAATATTTAATGGAAAAGTCTATTTTAATGGAGCATATGAGTACAGCTCATAAAGACTTATCATCTATTGCATCGACATCAACGGAAACCAAATTAAGTAGCCAACCAACAACTGGTAGTGATGACATGACATTAGATCGAATAACGACTAAATCGACTGGAATGGAGGAAGATATAATTGCCAAACAAAATGAATGTAATGACATTTCTATGGAGCTTTCTGAAAACAATAGCAATACCGAAAAATATAGAAGATTTGATGCTTATATCGCAAAATGGAAGGGGCACTTGGATTGTGttatatgtaaaacaaaatttgccAATTACAGTTTGTTAAAAAGACATTTTTCGAACAACCATCTTGACCAAGAAGTTCACATTGTTTGCTGCAACCGTAAAATAACTAAGAGATTTAAAATAGTTGAACACATTCGTAAATTTCACAATCatgtaaaaaatttacataaatgcaaaatgTGTAGTGCATCATTTccacaatatataaaattaagaagACATTATTTTCAGGTGCATAATCCCAGagataaatatgaatttaaatgTGAAACATGTGGAGCAGCATTTAAGCAAAGAAGAAgcttaaaaaaacacattcttAACAGGCACTCCGAAAAAAGTTTATCACTATGGTTTTGTCAAGAGTGTCACCgttcctttaaaattaaaatcagtttGGAAAACCATATGAAAAAGTTCCATTCAGATGTTACATTAAAATCAACGCTAAACAGAAGTACACCAGAAGAACAAGAAACAACTAAAATTACAATTAAACAGGAATCATCTAATAATGACATCACAGCTTCAACATCCAGTCTGCCTACACAGGATTCCCCAGACCTCCAATCTGATGAAATACAAAGTTGTCAACGTACACAAAAAATGTTGGAGAATGATGAAATTATAGCGAAATGGTATCCACAAGTAGACTGTAGGATATGTAAGGAGAAATTTACTTATTATTCGTTATTACGTGCACATTTCTACTGTAAACATCCGCAGGAAAGATGTTACATACTATGTTGCCAACGAATTTTCTATAAGACATTTGATGCTGTCGACCACATACGCATCCATTTGGATCCACATGCTTTCAAGTGTGATCTTTGTAATAAATCATTGTCTGCAAAAAGTAGTTTAAAGAGACATATGCGCAAAAAGCACGGGCGGCAAAGCATACATATGGAATTGTTATAA
- Protein Sequence
- MPPTTLCSLCISTCNTFKCLYNDDGQLSEVYYMVAKYFDPMFLRPGKYSTSVICTECWQHITDFHTFQQTVINTQYQQEYIEPIVQLTKLEELNESEKISLMQQIDKIRLKETTVTFDYDSERVKNDDFIAKCKGMLECVACHEMFETYSLLRNHFRMKHPEKEWYINCCKHKFYKRQKLMAHIRQHHNRTKKPGKYQCELCTESFSRNSYLSRHNRLVHNRLDHTDQQGYKCDICGLPFVLAFSLKKHMTLNHNPKSEFQSNLEKHREQVHSNLEIQVPLVKIEPAEEGLCAGKESLAETNSMVSIHNDDKTVETLENEISSNVELRTFTKEQKSTVEQFGDNVEIYKHKLEETLGNDNQIIDNTKPSQFLLSSEYPKNEIQKPPLDIVDIKDELPLDHDNDSNNEPSEPKTAPLNIKIRYSKIHKEIKEMEHDAFIAKHKGDLECPLCKGLHANYSLLREHFRDEHTGEKCYIVCCQLKLNSRYRLFEHLQFHINPKAYECDVCGKCFKNTGALVVHKQLVHIDKQSSNHHYLCGCKKSKELYAKYDTTIPKEEGRENVSRDFINQKYYSLLCCQLKQRMLGNDATIAKWNSELFCRLCGAKFSCYSLLRDHFCSNHPQENFYINCCQRKFYKIVDFLDHIRIHLPPNDFKCEICNEYLMEKSILMEHMSTAHKDLSSIASTSTETKLSSQPTTGSDDMTLDRITTKSTGMEEDIIAKQNECNDISMELSENNSNTEKYRRFDAYIAKWKGHLDCVICKTKFANYSLLKRHFSNNHLDQEVHIVCCNRKITKRFKIVEHIRKFHNHVKNLHKCKMCSASFPQYIKLRRHYFQVHNPRDKYEFKCETCGAAFKQRRSLKKHILNRHSEKSLSLWFCQECHRSFKIKISLENHMKKFHSDVTLKSTLNRSTPEEQETTKITIKQESSNNDITASTSSLPTQDSPDLQSDEIQSCQRTQKMLENDEIIAKWYPQVDCRICKEKFTYYSLLRAHFYCKHPQERCYILCCQRIFYKTFDAVDHIRIHLDPHAFKCDLCNKSLSAKSSLKRHMRKKHGRQSIHMELL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -