Cimp080376.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821520.1:74190850-74195231[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.1 9.4e+02 3.3 0.0 2 23 226 247 225 247 0.95 2 15 0.064 20 8.6 1.5 1 23 295 318 295 318 0.89 3 15 0.64 1.9e+02 5.5 0.1 2 21 376 395 375 396 0.94 4 15 4.3 1.3e+03 2.9 0.8 2 23 441 461 440 461 0.93 5 15 0.0038 1.2 12.5 2.0 1 23 475 497 475 497 0.95 6 15 0.0063 1.9 11.8 0.2 1 23 506 529 506 529 0.96 7 15 0.00013 0.038 17.1 0.2 3 23 536 556 535 556 0.97 8 15 5.3e-05 0.016 18.3 3.0 2 23 562 583 561 583 0.97 9 15 0.0019 0.58 13.4 2.3 1 23 589 611 589 611 0.97 10 15 0.0013 0.4 13.9 2.9 1 23 616 638 616 638 0.95 11 15 2 6.2e+02 3.9 3.1 1 23 643 667 643 668 0.95 12 15 1.8e-07 5.4e-05 26.1 0.5 1 23 745 767 745 767 0.99 13 15 0.011 3.5 11.0 2.0 3 23 775 795 773 795 0.97 14 15 0.0016 0.49 13.7 1.2 1 23 800 822 800 822 0.96 15 15 3.9 1.2e+03 3.0 0.1 1 23 827 851 827 851 0.92
Sequence Information
- Coding Sequence
- atgaaaaaacgcTGCCGTTTTTGCTTGTCATTAAATGCTGAAGAGTTTTATAGTGTCCACGAAGAATACCAAACTGGACTTACATTTGCTGAATTTGTACACCAGTTAGTAGATGTAGAAATTAAAATTGACGATGGTTTACCTCAGGAAATATGTGGTGAATGCTATCATGAAGTACGACGTCTACTAGAATTTGGCTTAGGTGTTCGAAAGGCAGATGAAGAATTAAGGAAGGAATTTAGTCTCAATAAATGTTATAAAGAGAATGATAGTGAACAAATGGGTAACTTGGAAGTTGTAGAAAATGACTTCTTTGCAGAGATGGACACTGAAGTATGTGTTGTTGAGGAAGTATTGGAACTGGATTCAGATAATCAAGACAGTATTGTGATTGAGGAAATTAATGATGGGGAAGAAATTCATTTGGTTGAAGAAATTATAAGGATAGATAAAGATAATATTAATGAACAAAGTGAAAAATCATATAACCAGAAAGAAGACTTACTAGTAGAATTGGCTGATGTAGCAGCTACGcaagaaaatgtaaaattcatTGATACTCTTGGTGCTAACACTGAAACTTTTTACATTGACGATGAGAATAATGATGACAATTATTTAATTGAATATGACCCTAACGAAACCTCAAATCATAATCTCAAACCACTAAAATGGAAGTGTGGAGAATGTAAGCTAATACTACGTGGCGATGTATCATATGAGGGTCATATGAATATGCACAAGCAATTAAGACCTCATAAATGTGCTCAATGTATTTATGCATTTAGATGCCGTACAGCCTTAAGGAAACACCAAGAATCTAAACATAAAACACCTGCAAATCATGAATTAAATGAAGCTCAACAAACTATAGAAACAAGTTACCTTTGTGTAGAATGTAAGAAACACTTTCGTACAGAGACAACTTTTTATATCCATGAAGTTATGATTCATAATAAACACAGCACTTCTTCCACCTGTCCATTTTGCTCAAttggaaatattgaaaatttgataGCACACATACAGTCATATCATATCAGCGAGTGCAATACGAACGAATATTCAGTATCCACCAATGATTATGCTGTTGCTTCCTCATCAACAACATCTACTAATGTTTGGCAATGTTATGTATGCTCTAACACATATGGATCATTAGAGTTGCTGAATGACCATCAGAAATTATGTTATAAAGGAGATGAACAAGAGGCACAGGTCTTAAAAATAGAGTACTTGGACGATGTAACATCAACAACTAACACCAAAGAAGAGTTTTTAAATGATGTAACATTAACAACTACCGTAGAATCTTCAGTGCAGTGTGAAGTATGTAAACGGAAACTATTGAGAAAAAATATAAGCAAACATATGGAGCTACATAATCGTAAAGATAAAGAGGCACAAGATGAAACTAGGAAATATTTATGTACCGCTTGTCCACGTGAgtttaaaaattccaaatctCTACATCAACATGAAAAAATACACGAAGGAGAATGCTCGGATCTAGTATATGTCTGTGGTGAATGTGAACGGCAATATGCCTCAGAATTTCTACTTGAAACACATCGCAAGCAAGCGCACAAAGAACGCGATAATATATGTCCAATATGCGGCAATGCCTTCAAGCTGAAAAATCAACTGGTAAACCACATGAAATTGCATTTGGAGAAGAATATACAATGTCCCCACTGTGAAAAGAAATATGCCAGGCATTTCGATTTAAATGTCCATCTAAGATCCCATACTGGAGAGCAACCGTTTGCTTGTCATTTGTGTGATAAACGTTTTGCTATTAAAGGAAGACTTACCTATCATCTGCAAAAACACTATGGCGTGAAACATCAGTGTAAAGAATGTGGTGCTGAATTTAAttccaaacaaaaattaaaagcaCATTCGTTTAAACATACCGGAATGCCATATCGTTGTGAATTGTGTGAAGATCATGGATTTGCTAATCGtaatgtgttTAAGCGCCATTTAAATCGTGTCCATCATAGCACCATGTCTGAAGAAGCTCTTAATGATATGTTTCAACAAAACACAGGCAAAACTGTCAAAATTAAACAGGTTAGTGAACAGAGTCTTGTACATACTACCGATGATGAAAACGAGGATGTACAGGATGACATTATGCACGAGAAACCGGCTGTCTTAAGTTCACCAGAAATTTTTATGGAAACTGAAGAACTATCTGCTCATAAAAGACTGCATAAAGAACGACCATTCAAATGCGATCAGTGTGATAAAGCCTATCCACGTAAAGTTGAACTTCAGATACATATGAGAACACATACAGGAGAACTACCGTATGGCTGTCATTTATGTGATAAACGTTTTGCCATTAAAGTGAGACTAACATATCATTTGCAAAAACACGAAGGCATTACACATCCCTGTCCATATTGCACGGCTGTTTATGACAATCGCAATAAATTGAAAGCTCATTTGTTCAAACATACAGGCATGCCTTATATATGTGAACTGTGTCCTGGTTTGGGCTTCGACAGGAGATTAAGattTGCCAATCATATGCAGAAAATTCATCAAAGAACATTGACCGAAGAGGAATTGGGGAAGATATTTGCCAAAAATACGGGAAAAACTGTACATTTTAAAAATCCTGAAAGTAAAACgtag
- Protein Sequence
- MKKRCRFCLSLNAEEFYSVHEEYQTGLTFAEFVHQLVDVEIKIDDGLPQEICGECYHEVRRLLEFGLGVRKADEELRKEFSLNKCYKENDSEQMGNLEVVENDFFAEMDTEVCVVEEVLELDSDNQDSIVIEEINDGEEIHLVEEIIRIDKDNINEQSEKSYNQKEDLLVELADVAATQENVKFIDTLGANTETFYIDDENNDDNYLIEYDPNETSNHNLKPLKWKCGECKLILRGDVSYEGHMNMHKQLRPHKCAQCIYAFRCRTALRKHQESKHKTPANHELNEAQQTIETSYLCVECKKHFRTETTFYIHEVMIHNKHSTSSTCPFCSIGNIENLIAHIQSYHISECNTNEYSVSTNDYAVASSSTTSTNVWQCYVCSNTYGSLELLNDHQKLCYKGDEQEAQVLKIEYLDDVTSTTNTKEEFLNDVTLTTTVESSVQCEVCKRKLLRKNISKHMELHNRKDKEAQDETRKYLCTACPREFKNSKSLHQHEKIHEGECSDLVYVCGECERQYASEFLLETHRKQAHKERDNICPICGNAFKLKNQLVNHMKLHLEKNIQCPHCEKKYARHFDLNVHLRSHTGEQPFACHLCDKRFAIKGRLTYHLQKHYGVKHQCKECGAEFNSKQKLKAHSFKHTGMPYRCELCEDHGFANRNVFKRHLNRVHHSTMSEEALNDMFQQNTGKTVKIKQVSEQSLVHTTDDENEDVQDDIMHEKPAVLSSPEIFMETEELSAHKRLHKERPFKCDQCDKAYPRKVELQIHMRTHTGELPYGCHLCDKRFAIKVRLTYHLQKHEGITHPCPYCTAVYDNRNKLKAHLFKHTGMPYICELCPGLGFDRRLRFANHMQKIHQRTLTEEELGKIFAKNTGKTVHFKNPESKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -