Cimp097888.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- grau
- Assembly
- GCA_963682025.1
- Location
- OY821521.1:55413401-55419898[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.4e-05 0.01 18.9 1.2 1 22 265 286 265 288 0.90 2 11 0.00048 0.15 15.3 1.7 1 23 296 318 296 318 0.97 3 11 0.56 1.7e+02 5.7 0.8 1 23 326 352 326 352 0.91 4 11 0.0053 1.6 12.0 1.5 2 23 358 379 358 379 0.97 5 11 7.3e-06 0.0022 21.0 2.4 1 23 603 625 603 626 0.95 6 11 0.0009 0.27 14.4 4.9 1 23 634 656 634 656 0.92 7 11 0.0071 2.2 11.6 1.0 3 23 697 717 696 717 0.97 8 11 0.015 4.7 10.6 0.1 2 23 726 749 725 749 0.96 9 11 0.0001 0.031 17.4 0.4 1 23 756 779 756 779 0.96 10 11 0.00027 0.084 16.1 0.4 1 23 784 806 784 806 0.97 11 11 0.00024 0.072 16.3 5.0 1 23 812 835 812 835 0.98
Sequence Information
- Coding Sequence
- ATGTTGTGCTGTTTGTGTTTATTGGAAAACCCGAATTTAATGGGTATTTTTGGTGTTATGGGCGAACAATTGAATATTGTCGAAATTGTTAATGAACATTTTTGGTTCAAGCCTCATCAACATGATATGCTAGCTTCACAAATATGTACCTCTTGCTGGACCAAAATTGACGACTTTCACAAATTCTACAAAAGTGTGGAGAAAGCACACCAGGAATTTCAACAAAATCAGGTTTCCATTAAGAGAGAGGAGAAAATATCTTTAAATGCAATAAAAGAAGAAATATATGATGAAAAAGGCCTTGAAAATAATCTTGAACAGTTGGAAATAGAAATTGtggataatataaataaatataaacaaagtgAAGACTTATTAGAAGTGGAAAATCCTTTATCGGATGGTCAAAACGAAAGCGATTGCAATAACGAATCGGATTTTGAATATGAATGTGTTGCTAGTGAAATTTTAGAACATGATTCATCTGACGTGGATATatccacaaatttaaaaaatacaaatacgaAACGAAAAGTTTCAACTAAATCagagaaaaataaagaattcCGTGACAAAAAACGGAAATTAAACCAATCAGAGAACGTTGTTAAAAAACACATACCAATGGTTTGCGATTTGTGTGATTTTGTTGGCAACACATTTTGCGATATAAAGGAACATTTCAAAGAACATCATCCAGACGTAAAACCATACATAATGTGCTGTaataaaaaaatcgacaaaaattatATGATTGTTAATCATTCGGCCAGACATGAAAACCCTGATTGTTTCAGatGTAATGAATGCAATAGATCATTTACAACGCCCAAAGGCCTTCGAACTCATAATATTGAATTTCATGGACCTGAAGAGAATAAAATGCACTCTTGTGATTTGTGTCCACGTAAATTTGGAAGAAAAAACCTACTAGAAATTCATAGACAATCTCACATACCAAGAGAAGAATGGAATTTTATATGTACGAAATGTAGCGCACGTACTTTTAAATTTGCTTCTCAATATTTATTGAATATACATGTAAGCATGTTTCACAATCGAAAAATCAACGTTTGTCATGTGTGCTCTAAAGAAATTAGAGAtaaaaaagcatttgaaaaacaTGTACGTTTACATTTTGAAGATAGTGGACCACGCATTAAATGTCCTATTGATACATGCCAAAGTTGGTTAAAAGATGAAGATAATGTGAAATATCATATACAAAGATATCATAAAACGTATAAATGGTCAGAATGTCGTAAGACATTGTGCATTCAAAAGCAAGATGTCGAGCAACTCATTtatgataaattaaataaaaatatgaaagaacTAACAAATCAatttgaaaatgagaaaaatgATTTCGAATTCGATGATAAATCCGATATTGAATGTGATACATCAGACGAAGATAAACCTTCGGAAATTAGAGATAATGATTTATGTCTGGACGAGAAACGATTAATTGACGTGAAATCAGATAATTCAACAAACAATTTCGAGGATCAAGACGGAACTGAACCTACATCCTATATAGAAtcaaaaaaaattgaagattcTACTAAGAAAACAAGGACTTCACATCGACTAGATCCAAAAATCTCTgatgcaataataaaaaaacatataaacatgaCATGCGACTTATGTGTCTTTGTTGGTAAATCATTCCCAGATATAAAAGAACATTTTAAAGACCATCATCCAACTGAAAGAGCATATATAATGTGCTGTAACAGAAAATTTGATAGACTTTATGTTATAGCCCAACATGCGGCAAGACATGAAAACCCTGATTGTTTTAGATGTAATGAATGTAATAGATCCTTTACAACACCATATGGCCTTCGAACACATACTATTGAACATCATGCGCCTGATGAGGAAAAAATGCATGCTTGTGAATATTGTCCAcgaaaatttcaaagaaaaaatttactgGAACATCACAGATCGACCCATATACCAAAAGAGCAATGGACTTTCAACTGTACCAAATGCATAACACGTACATCAATATTTGCTTCTcagtatttattaaatattcataatagtATGTTTCACAGAAAAGAAGGTAACATTTGCCATGTATGCGCCAAGGTTATTAAAGAtaaaaaagcatttgaaaaacaTGTACGTTATCATTTTGAAGATAGTGGACCTCGTCTTAAGTGTCCCCTACCTGACTGCGACAGATGGTTAAAAGATGAAGATAATTTAAAGACACATATCCAATTACATAATTTAGGTGGGAAAACTTATAAATGCCCCGAATGTGATAAAGAATGTCCCAATCGTAGGGCCTTGGCAGGTCATATTCGTTTTGTGCATTCTAAAGACATATTTCGATGTGAAGCATgtgataaaacatttaaaaaagctCTGGGTTTAAAGgaACATATGGCGCAACATACTGGAGAAAGTTTATATAAATGCCCATTTTGTGATAGAACTTTCAATTCAAATGCCAATATGCATTCCCATAAGAAGAAAAAGCATCCTATTGAGTGGGAGCAattgagaagaaaaaaaattggtcCTTTGCCaagttaa
- Protein Sequence
- MLCCLCLLENPNLMGIFGVMGEQLNIVEIVNEHFWFKPHQHDMLASQICTSCWTKIDDFHKFYKSVEKAHQEFQQNQVSIKREEKISLNAIKEEIYDEKGLENNLEQLEIEIVDNINKYKQSEDLLEVENPLSDGQNESDCNNESDFEYECVASEILEHDSSDVDISTNLKNTNTKRKVSTKSEKNKEFRDKKRKLNQSENVVKKHIPMVCDLCDFVGNTFCDIKEHFKEHHPDVKPYIMCCNKKIDKNYMIVNHSARHENPDCFRCNECNRSFTTPKGLRTHNIEFHGPEENKMHSCDLCPRKFGRKNLLEIHRQSHIPREEWNFICTKCSARTFKFASQYLLNIHVSMFHNRKINVCHVCSKEIRDKKAFEKHVRLHFEDSGPRIKCPIDTCQSWLKDEDNVKYHIQRYHKTYKWSECRKTLCIQKQDVEQLIYDKLNKNMKELTNQFENEKNDFEFDDKSDIECDTSDEDKPSEIRDNDLCLDEKRLIDVKSDNSTNNFEDQDGTEPTSYIESKKIEDSTKKTRTSHRLDPKISDAIIKKHINMTCDLCVFVGKSFPDIKEHFKDHHPTERAYIMCCNRKFDRLYVIAQHAARHENPDCFRCNECNRSFTTPYGLRTHTIEHHAPDEEKMHACEYCPRKFQRKNLLEHHRSTHIPKEQWTFNCTKCITRTSIFASQYLLNIHNSMFHRKEGNICHVCAKVIKDKKAFEKHVRYHFEDSGPRLKCPLPDCDRWLKDEDNLKTHIQLHNLGGKTYKCPECDKECPNRRALAGHIRFVHSKDIFRCEACDKTFKKALGLKEHMAQHTGESLYKCPFCDRTFNSNANMHSHKKKKHPIEWEQLRRKKIGPLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00371597;
- 90% Identity
- iTF_00371597;
- 80% Identity
- -