Cimp094836.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821520.1:251579845-251606721[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00021 0.063 16.5 0.3 1 23 571 595 571 595 0.91 2 9 0.00021 0.063 16.5 0.3 1 23 1021 1045 1021 1045 0.91 3 9 0.0032 0.98 12.7 2.7 1 23 1520 1543 1520 1543 0.97 4 9 5.8e-06 0.0018 21.3 3.5 3 23 1570 1590 1569 1590 0.98 5 9 0.0017 0.52 13.6 3.9 1 23 1596 1618 1596 1618 0.99 6 9 4.2e-06 0.0013 21.8 0.5 1 23 1624 1646 1624 1646 0.99 7 9 0.003 0.92 12.8 0.6 1 23 1652 1674 1652 1674 0.97 8 9 0.00068 0.21 14.8 0.1 3 23 1682 1702 1681 1702 0.97 9 9 0.0015 0.45 13.8 4.5 1 23 1708 1730 1708 1731 0.96
Sequence Information
- Coding Sequence
- ATGAAGCAAAATAAATGTAGTAATATTGATCATGACAACATACAATTACCctggcaacaacaacagcagccacAATTACCTGATCATTTAAGATGTGGTGAAGTTTATACTTGGAAATGTGCAGACGAATTATATGCGGTCGAATGCAAATTATGTGAAGATAGCCCACTGTGTCCATTATCGGAATTTCCTCAACATATGGAAGTATGGCATACAGATTGGGAAGAACCGTTAACGCGTGAAGGAGATTCACGAGTAAATGAAAATGACGATCACGGTGGgaatgatgatgataataatgaaGATCTGTATTTATCATTTACTACTGAAGATAGTGGGTTATATGAAGAAGATAAACAAGGTGACGTGGAAGAAGATCAAAAAAATCTTTTACAACATGCTGATCATGATGTAGAAATTTTAGAACCTTTCGAACAGGTACTAATAGAACAAGATAATGTCGTAGATACAACACAAATTAATGAAACCGGAGTTGAAGAAAAGATAAATAAAGACAAACCAGAGATAGAACAAACAATAGACGGTGATATTGCCAAAGGTCCACAAATCAGAAATCAGATAATACAACTAAATGTAAACAGTTTAATAGATGCGAGTTATGCAAACGAAAAAAGTGGCGTAAATAATGGAGAAACCCTAAAAGAATATGGGTTTTCATTAAACTGTTTAGAAAGAGAGTCTTGCCCACAAGAAGATCAAAGTGAAAATTTAAATTTGGATAATATAACATTAAGTAGAGACTGTGAAACTCTTAACTCATTAACCACCGTgaatatttatgatttattatctCCAAGTTCATTAGAAAATCCTTCTGTTACTTCATATGCTGCTGAGTCTTCTTTGTACTTATCTCCAGATTCTCTCTCTAGTTCTTTTAGAACCCGTGGCTATATGTCTCAAGAAGACGTTAACAAAGGAAATTCGTTAttcaattgtaaaaaaaatctaaacaacTTATTTGATTCTTTTGCGACAATCAGCGAAACTCAACCTTTATCTCCTCAATCGCCGGTAACGGAAGAAGAacattttgaattttatgaaccTAAGGTAAAGTTAACCAAACATCATATAAGCCAACTGATATCCCTCTACAAAGAACATCCCAGACTATGGGATCAATCCCATACCGAATTCTGTGAGCCACACTTGTGCAGACATTCGTGGCAAGACATAACCAATAAATGGAACTCCTACTGCAAACGTAAATTCACCATTACTGAAGTACGCATCAGAATCTGTACCCTATGTCAACGTTATCTTAAAGAGCGCGAACGTTTAGAACTAGAAGGAGAACTTGATGAGAGTGCCAAATTTCCCTACTACGAAGAAATGCAATTTTTGGAGCAACAAAAATCTCTACAAAAAAGACGAGATCTTTATGATCAACAAAATGAAAAGGTCTTGGAAATGTTTAAGCATTTTCCGGTACTTTGGCATGTAGGCTGTTATAAGCTGAGACAAGCTAAAGAGAGATCAAAAGCATTTCAAAACATAAGCACAGCTCTCAAACTTTGTGGTATCCATCTCTCTTCACTGGAAGTGCAGAAACGTATGCGATCACTCAAGAAATGTTATCGCTTGGAGAAGATACGCTATCTACATTGTCAAGTCGAACAAACGACATTTGAGCCAAAATTTAAACATTTCGAGAGaatgcaatttttaaataaacacataGATCCCTTCGTTTGTCGTATTtgcggtaaaatatttgaaaatcttTCACAGTATCGTGAGCACTTGGATACTGAAAATCATGGTTATATATTAGATGACGAGAGTGAAAACGAAAGTGAAACAGATAATCCAGGGAAATTAATCGAATATGTAAACGAAACATTTACCACCCCGAAAGAATATCTGCAAGATAATATTGAAACAAATAACGCTAAGAAAAATTTTGCAATACCAAATAATATGGATATTTCAGAAGTTCCTGCTATCAATGAAACTGCTGTTACAGATTCTTTACCTCATCTCAATGAAGTGGCTTTATATAATTCATCTCCCGTTATTAATGAAGTTTTAATTTCTCCTGCTAACTCTTGTGAACGACCAATTTTGAATTCTTTACAAATAATTGAAGGAGATCaaataattgaagaaaatatggaaaatgttTCTATGAATGAAAGTTTTACCACACAAACATTGGCTAATTTCATAAATTACGTTAACAACTGTGAAGATATTACTCTCAGTAATTGCATTGATTCGGAAACTTTACCTGTAACCCTTCTAGATGTAGAAATTCCAAATATAAGTGTACAAAACGAAATAATAATTGATCCATCTATGGATATGCAACtttcaaattataataatgaaattgaaGTGGATGTTAGTAAAACGAATTGCAGTGAAAATCATGAAATGGAACGAACTCAAACGGGAAATGTAAAGTTAACCAAACATCATATAAGCCAACTGATATCCCTCTACAAAGAACATCCCAGACTATGGGATCAATCCCATACCGAATTCTGTGAGCCACACTTGTGCAGACATTCGTGGCAAGACATAACCAATAAATGGAACTCCTACTGCAAACGTAAATTCACCATTACTGAAGTACGCATCAGAATCTGTACCCTATGTCAACGTTATCTTAAAGAGCGCGAACGTTTAGAACTAGAAGGAGAACTTGATGAGAGTGCCAAATTTCCCTACTACGAAGAAATGCAATTTTTGGAGCAACAAAAATCTCTACAAAAAAGACGAGATCTTTATGATCAACAAAATGAAAAGGTCTTGGAAATGTTTAAGCATTTTCCGGTACTTTGGCATGTAGGCTGTTATAAGCTGAGACAAGCTAAAGAGAGATCAAAAGCATTTCAAAACATAAGCACAGCTCTCAAACTTTGTGGTATCCATCTCTCTTCACTGGAAGTGCAGAAACGTATGCGATCACTCAAGAAATGTTATCGCTTGGAGAAGATACGCTATCTACATTGTCAAGTCGAACAAACGACATTTGAGCCAAAATTTAAACATTTCGAGAGaatgcaatttttaaataaacacataGATCCCTTCGTTTGTCGTATTtgcggtaaaatatttgaaaatcttTCACAGTATCGTGAGCACTTGGATACTGAAAATCATGGTTATATATTAGATGACGAGAGTGAAAACGAAAGTGAAACAGATAATCCAGGGAAATTAATCGAATATGTAAACGAAACATTTACCACCCCGAAAGAATATCTGCAAGATAATATTGAAACAAATAACGCTAAGAAAAATTTTGCAATACCAAATAATATGGATATTTCAGAAGTTCCTGCTATCAATGAAACTGCTGTTACAGATTCTTTACCTCATCTCAATGAAGTGGCTTTATATAATTCATCTCCCGTTATTAATGAAGTTTTAATTTCTCCTGCTAACTCTTGTGAACGACCAATTTTGAATTCTTTACAAATAATTGAAGGAGATCaaataattgaagaaaatatggaaaatgttTCTATGAATGAAAGTTTTACCACACAAACATTGGCTAATTTCATAAATTACGTTAACAACTGTGAAGATATTACTCTCAGTAATTGCATTGATTCGGAAACTTTACCTGTAACCCTTCTAGATGTAGAAATTCCAAATATAAGTGTACAAAACGAAATAATAATTGATCCATCTATGGATATGCAACtttcaaattataataatgaaattgaaGTGGATGTTAGTAAAACGAATTGCAGTGAAAATCATGAAATGGAACGAACTCAAACGGGAAATaaCTCCCCACCAGCTATAACAGTAAACGTCCAGTGTGAAGGATTTTCTGTAGACCTTAAATTAAACACAAACAATGAAAGTTTTGAGATTCCCACATTTAATGATGAAGAACTGAATTCGTCTGAAGTTGATAGTATTTTTGCGCGATTGTCTGATTCCGATATACGTAAAATGATTGCTTTGTATCGTAAATATCCCCAATTATGGGATCCCAATCACTTGGATTATAATTCACGTAACTTACGTAGACAAGCCTGGTGTGATCTAACGGCAGAATATTGTAAATTAATTGGCAGAGAGGTCTCATGGCGGACATTACATCGAAAGCTGGCGGATTATGCTAAGTACTATAAGAAATTGCTAACAGATCAGCAGGATTATGaggaaatgcaaaataaatggatattttttgaggatttaaaatttctgaatgatGTGATTGCCGTTAATGATGAACTTCAACGTAGTGTCCATCATCGtgataacaattttaaaataataggCATTTATAAATCCCTTCCCCAGCTCTGGGATATTAAACATGCTGATTTTAATAAGCGTCCGATAAAACAACGTAATGTCGAACAAATGTGTAATCGTTTACAGGAGGAATATAATCTGCAAATAACACCAGAACGTTTAAAAAATCGCCTAATCGAGCTAAGAGCACAATATCGGGCAGCCAAAAAGCAAAGATTAAAATCTATGAAAACTCTGCAAATCTATACACCGGAATTTGAGTTTTACGAGGCCTTGAACTTCTTAGATCCTCATATAGATCCCTTTATATGCGAACAATgtaaaatggaatttaaaaaactgaCCGACTTTAACCAGCACCAGCGTAAGACTCATGAAAAGAAGATTTTAAGACAACAGCCGCTCTCGTTAACCGATCACAGGGAAGGTTATGATCATCTGTTGGAAAATATTTGCCATATATGCGGTATAAAATTCACCACCCGCAGTAATCTCATTCATCATGTACGACGTCATGAAggcattaaaaattatgaatgcaCCTTGTGCATGAAGAAGTTCTTCTCATCGCATTCCCTGAAAGTCCACATAAGGTCACATACGAAAGAATGTCCATACACGTGTGAAAAGTGTGGTATCTCATTTGTTAGTGCCAGCAAATTGAATCAACACGTTAAGCGTCACtctaataaaaaagattttgcttGTGATTATTGTCCCAAAGCCTTTTTTACAGCCTTTGAAAGGGATAGGCATGTGAGGAGGCACCTAAATATACGTGATAAAATCTGTCCTACCTGTGGCAAATCTTTTGTGGTAGGTTCATCGTACTATGCTCACATGATGTTGCACAATGACACGAAAAGATTTTCATGTGATAAATGTGATATGAAGTTTGCCCAGTATTCAGGACTCTATAAACATAAGAAAAGACATCATAAAACGTAA
- Protein Sequence
- MKQNKCSNIDHDNIQLPWQQQQQPQLPDHLRCGEVYTWKCADELYAVECKLCEDSPLCPLSEFPQHMEVWHTDWEEPLTREGDSRVNENDDHGGNDDDNNEDLYLSFTTEDSGLYEEDKQGDVEEDQKNLLQHADHDVEILEPFEQVLIEQDNVVDTTQINETGVEEKINKDKPEIEQTIDGDIAKGPQIRNQIIQLNVNSLIDASYANEKSGVNNGETLKEYGFSLNCLERESCPQEDQSENLNLDNITLSRDCETLNSLTTVNIYDLLSPSSLENPSVTSYAAESSLYLSPDSLSSSFRTRGYMSQEDVNKGNSLFNCKKNLNNLFDSFATISETQPLSPQSPVTEEEHFEFYEPKVKLTKHHISQLISLYKEHPRLWDQSHTEFCEPHLCRHSWQDITNKWNSYCKRKFTITEVRIRICTLCQRYLKERERLELEGELDESAKFPYYEEMQFLEQQKSLQKRRDLYDQQNEKVLEMFKHFPVLWHVGCYKLRQAKERSKAFQNISTALKLCGIHLSSLEVQKRMRSLKKCYRLEKIRYLHCQVEQTTFEPKFKHFERMQFLNKHIDPFVCRICGKIFENLSQYREHLDTENHGYILDDESENESETDNPGKLIEYVNETFTTPKEYLQDNIETNNAKKNFAIPNNMDISEVPAINETAVTDSLPHLNEVALYNSSPVINEVLISPANSCERPILNSLQIIEGDQIIEENMENVSMNESFTTQTLANFINYVNNCEDITLSNCIDSETLPVTLLDVEIPNISVQNEIIIDPSMDMQLSNYNNEIEVDVSKTNCSENHEMERTQTGNVKLTKHHISQLISLYKEHPRLWDQSHTEFCEPHLCRHSWQDITNKWNSYCKRKFTITEVRIRICTLCQRYLKERERLELEGELDESAKFPYYEEMQFLEQQKSLQKRRDLYDQQNEKVLEMFKHFPVLWHVGCYKLRQAKERSKAFQNISTALKLCGIHLSSLEVQKRMRSLKKCYRLEKIRYLHCQVEQTTFEPKFKHFERMQFLNKHIDPFVCRICGKIFENLSQYREHLDTENHGYILDDESENESETDNPGKLIEYVNETFTTPKEYLQDNIETNNAKKNFAIPNNMDISEVPAINETAVTDSLPHLNEVALYNSSPVINEVLISPANSCERPILNSLQIIEGDQIIEENMENVSMNESFTTQTLANFINYVNNCEDITLSNCIDSETLPVTLLDVEIPNISVQNEIIIDPSMDMQLSNYNNEIEVDVSKTNCSENHEMERTQTGNNSPPAITVNVQCEGFSVDLKLNTNNESFEIPTFNDEELNSSEVDSIFARLSDSDIRKMIALYRKYPQLWDPNHLDYNSRNLRRQAWCDLTAEYCKLIGREVSWRTLHRKLADYAKYYKKLLTDQQDYEEMQNKWIFFEDLKFLNDVIAVNDELQRSVHHRDNNFKIIGIYKSLPQLWDIKHADFNKRPIKQRNVEQMCNRLQEEYNLQITPERLKNRLIELRAQYRAAKKQRLKSMKTLQIYTPEFEFYEALNFLDPHIDPFICEQCKMEFKKLTDFNQHQRKTHEKKILRQQPLSLTDHREGYDHLLENICHICGIKFTTRSNLIHHVRRHEGIKNYECTLCMKKFFSSHSLKVHIRSHTKECPYTCEKCGISFVSASKLNQHVKRHSNKKDFACDYCPKAFFTAFERDRHVRRHLNIRDKICPTCGKSFVVGSSYYAHMMLHNDTKRFSCDKCDMKFAQYSGLYKHKKRHHKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -