Cimp097299.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821521.1:45688270-45705018[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.016 5 10.5 2.5 2 19 599 616 598 618 0.95 2 16 0.15 46 7.5 1.6 2 23 660 681 659 682 0.93 3 16 0.12 36 7.8 0.5 5 23 692 710 689 710 0.92 4 16 2.5e-05 0.0075 19.4 1.4 1 23 717 740 717 740 0.96 5 16 8.1e-05 0.025 17.7 0.5 2 23 748 769 747 769 0.97 6 16 0.6 1.8e+02 5.5 0.1 1 21 778 798 778 799 0.90 7 16 0.0005 0.15 15.2 1.0 1 22 819 840 819 843 0.91 8 16 0.091 28 8.1 5.9 1 23 848 870 848 870 0.94 9 16 0.057 17 8.8 0.1 1 23 886 911 886 911 0.96 10 16 0.059 18 8.7 0.7 2 23 921 943 920 943 0.94 11 16 0.0026 0.81 13.0 2.2 2 23 949 971 948 971 0.95 12 16 0.0026 0.78 13.0 0.4 3 23 976 997 974 997 0.95 13 16 0.31 94 6.5 5.2 1 23 1003 1026 1003 1026 0.94 14 16 0.002 0.61 13.4 0.8 1 23 1031 1053 1031 1053 0.98 15 16 4.7e-05 0.014 18.5 1.2 1 23 1059 1081 1059 1081 0.98 16 16 0.25 77 6.7 0.4 1 23 1087 1115 1087 1115 0.86
Sequence Information
- Coding Sequence
- atggCGGTTAATGTTTCTACAGTTCTCAGTATTTGTTTATATTGCAAAACATCCTCAGCGAGCGAACCTGAAAAAGAATTCCATGAAATTTTCGATGACGTTGGTGTGGAGTTGCAATTGCCCACATTGGTGGAgaaatttttccatagaaaatttaCAAATCATGGCAAGCAACTGTTGTGTGAAGATTGTGTTAATCGTTTAATTGAGTTGTATGATTTGGAAGAACATGTCAAAGAGGAAAAGTCTTACAAACTGGATCAAAAAGATTTAGTTGTCGCAAATGTATCAGCAACAAGAGAAAAGACAACTTCTGATAGCaatgaaaatgttgaaaaattaccaaatttatgtgtgcaaaataaaaatactttgacggatgaaaaaaataatgaaattttgcaAGCCATTGAAGATGTTAATTATGATAATGATCTAGAAATTGATATTACACAGGTTCAAAAAAAGGATTCAACAACTGTGGGTAATGTTCAGTATAATGATGATGAGGATCCTAAAATACATGCTTTCAAGAATTTACAAGAAATTCCTCAACAACAACCAAAAGGTTTAGAAGTTTCGATTGACTTTATAGTAGAGAGTGATCTTAATGCTGATGACCAAGAGATTGAATCGACTAAAGCTATTGACAATTTCCAGTATGAAGATAATATTCAGCAAGATGAATCAGAAGATGATCTTGAATCAAATCAAGAAGTTGTTGAATTACAAACTGATAATCAAAACCGTACATATGACTTCACAATAGCTTATAATTCGAATTCTGAAAGCCCAGAAATTGAACCAAATGAATTCAGTGAGGGTGTGCagtatgataatgataatgaatgTGAAATTTCCAACCGAAATTCAAAATTTCCTCTAAACAATGAAGATCAAGAATTTATTATAACTAAAAATAACTGTGGTTCACCAGACAGTGACGATCCTGGCTTGACAGTCAAGCTTGTGGAAAATGTTACCAATAAAGATAACATAGAAGGTACGGAAATACCCAGTGGAGAATTGGATGTAGACAATGAAGATGAAACTGATATACCGAAAGAACAACTAATTAACGACATTGATACTGTTCAGTCTTCGGAGAGTGTTTATAAATATACCGATGAAAATGATTTTGTAGAAGAACATGTATATGATGAACAAAATTCTGTTGATGGTTTATATTATGAAATGGTTTTAGAAGACGATAATATTGAAGAATTCGTGGAATCAGTTGACGAGAATGTAGGCGATATTGAATTCATATGTGAAGAGTTGATATCAATGAAAGAAAATATCGATATTGATAAGGATACGCAAACCATACAAGAGGATTTTACAGATTTACTACAAATGGATACTGATAATTCAGTTTCAAATGTTGCAAAAACTAAAGATACTCAAGATGACAACGAAGTTGTCGAGGAAGTTATGATGGAGAACATGGAAGATGAAACAATGTCCACagaagaagaatatttaattgaggAACTTACATTTTCTGAGGAACTTGATTGTGTAGACCTTAGCTCGTACTTAGATAATGTTTTATTaacagaatttgaaaaattagacTTAAAATGGCCGGTAGAATGCAAGTTATGTCTAGAAAAAAACGAAACCTTACAAGATTTACTAAATCATTCTTGTATAAATGAATTATTTGAGCAAGAACAACAATGCTGTTGTATATTTAAAGATTGTGAAGAAATTGTTAACGATATTAAATCATTAGCTAGACATTTGATTCTACAACATTATGATAATTTGGAGAGTCTTTCCATATATAGTAGATGTACAGATTGTGAAAAAAACTTTTCGAATTTTATCGAACTTAATAAACATTCATGTTGTCGCAACATAAAAAGAAAATCTGGCAGTCGAAAatattgtaaatcttgttgtatggatTTTGCATCTTTAAAAAGgtATATCTTTCATATGCAATTCCATTTGACAAAACATCGTCCAAAAGTATGTTTGTTGTGCGGTGcattatttaaaaattccaaTGATTTCTTTGAACATACCCAATACCATCATGAGCCAGAAATTGCAATGGCATGTATCAAATGTGatcgtttctttaaaaatattaataattatgaaaGTCATTTGGAATTACATGATGAATCGAAATACACTTTTTCCTGTACATATTGTCCCAAAAAGTATACCAAAAAATCCGGTTTAAATCTTCATatggATGTTTATCATAATCACAAGAAAAAACCTTTGCAATGCGAATATTGTGATAAAGAATTAGCAACAAATGCATCATATCGCAATCACATGAAATCTCATATACCTGAAGTTCAAGTACCAGCTTTTGTTTGCTCTGAATGTGGCTTAATTTCAGACAATTCAAATTTTATGAAGGATCACTTGGAAACGGATGAAGAATCACCCTGTTATTCAGCATTATTGACGGAAGAAGCACTATCGGCAGGCTATACATGTGAAAACTGTTCAATAGATTTTCGTTCCAAAGAATATTTGCAAAAGCACCGTTTATCGGCTAGCCATAATGATAAAGTATTTTATTGTTATGTATGTCGTAAATCATTTAAATCCTTTAGGCATATGCGTAATCACTCcataaatcataaaaattatGAGCAATGCCAAGATATGTTTCCTATAGCAAGATTTTATATGTGTGATATAGAAggTTGTCAAGAATCATATCCTCTGTGGAGTTCTTTGTACTATCACAAGAAAAGACCACATAGCAACAGCGTTGCTGTAAATCAATTGAAGTGTCAATTTTGCGAACAATTTTTCTTCAGCAAAATGTCATTGGCGGTGCACGTAGCTAGAAGTCATAACAAAAcATTTATTCGCTGTTCTCATTGTAATCAGTcctataaaaatgaaaagttattaAAAGGCCATATTGCTAAATTCCATACAGCTGTGAATTGTTCTATATGTTATGCAAGTTTTAAAAATGGCCGTAATTTGGAGTCCCATTTAAGACTAAGACATGCCAATGAAAAACGGTATTTTTGTAGACATTGTAAAAAGGGCTACTTTTATAAAAGTGAAATGGAAGCTCATGAAAAACAtGTACATacagatattttatataaatgtgaAATCTGCAATTTTATTACCAGTTATCAAAAATCATTAGATATTCATATGGACAAACATAACAACAAACTTAATTTTCAATGTACAATTTGTTCCAAATCCTTTGGACGGAAACAGTTATTATCCGTGCATGCGAAAAGGCATCAAGAGATTAAAGaATATGTTTGTCGTGAATATTATACCTTGGGTTGTAATGCTTCGTTTGTTACTTATAATCTTATGAAAACCCATATagaaaagaaacatgaaaaaccCAAGGATGGCAATGAAAATGTAGCTCTCAAACGTAGGCGTCCTCCAAGAAAATATCCTAAAATTACTCAAATGGAAGATTCGACATCAGTAACATTATTAGATGATAACAATGCGCCCAAACGTCGTAATAGAACTTCGGAAATTGCTGTGAAAGATTTCGAATTTGAAACTAATTCTGTAGAAATAATAATGAAAGAACAACTATCGGAGGAGGATCAACAAAGTGGTCATGAATTTACAATACAATACGAAGAAGAAGAAGACAATATGGAAAGTTGtgatgaatttataaaaattaaataa
- Protein Sequence
- MAVNVSTVLSICLYCKTSSASEPEKEFHEIFDDVGVELQLPTLVEKFFHRKFTNHGKQLLCEDCVNRLIELYDLEEHVKEEKSYKLDQKDLVVANVSATREKTTSDSNENVEKLPNLCVQNKNTLTDEKNNEILQAIEDVNYDNDLEIDITQVQKKDSTTVGNVQYNDDEDPKIHAFKNLQEIPQQQPKGLEVSIDFIVESDLNADDQEIESTKAIDNFQYEDNIQQDESEDDLESNQEVVELQTDNQNRTYDFTIAYNSNSESPEIEPNEFSEGVQYDNDNECEISNRNSKFPLNNEDQEFIITKNNCGSPDSDDPGLTVKLVENVTNKDNIEGTEIPSGELDVDNEDETDIPKEQLINDIDTVQSSESVYKYTDENDFVEEHVYDEQNSVDGLYYEMVLEDDNIEEFVESVDENVGDIEFICEELISMKENIDIDKDTQTIQEDFTDLLQMDTDNSVSNVAKTKDTQDDNEVVEEVMMENMEDETMSTEEEYLIEELTFSEELDCVDLSSYLDNVLLTEFEKLDLKWPVECKLCLEKNETLQDLLNHSCINELFEQEQQCCCIFKDCEEIVNDIKSLARHLILQHYDNLESLSIYSRCTDCEKNFSNFIELNKHSCCRNIKRKSGSRKYCKSCCMDFASLKRYIFHMQFHLTKHRPKVCLLCGALFKNSNDFFEHTQYHHEPEIAMACIKCDRFFKNINNYESHLELHDESKYTFSCTYCPKKYTKKSGLNLHMDVYHNHKKKPLQCEYCDKELATNASYRNHMKSHIPEVQVPAFVCSECGLISDNSNFMKDHLETDEESPCYSALLTEEALSAGYTCENCSIDFRSKEYLQKHRLSASHNDKVFYCYVCRKSFKSFRHMRNHSINHKNYEQCQDMFPIARFYMCDIEGCQESYPLWSSLYYHKKRPHSNSVAVNQLKCQFCEQFFFSKMSLAVHVARSHNKTFIRCSHCNQSYKNEKLLKGHIAKFHTAVNCSICYASFKNGRNLESHLRLRHANEKRYFCRHCKKGYFYKSEMEAHEKHVHTDILYKCEICNFITSYQKSLDIHMDKHNNKLNFQCTICSKSFGRKQLLSVHAKRHQEIKEYVCREYYTLGCNASFVTYNLMKTHIEKKHEKPKDGNENVALKRRRPPRKYPKITQMEDSTSVTLLDDNNAPKRRNRTSEIAVKDFEFETNSVEIIMKEQLSEEDQQSGHEFTIQYEEEEDNMESCDEFIKIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -