Cimp080421.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821520.1:74711804-74714455[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00013 0.04 17.1 2.0 1 23 232 254 232 254 0.97 2 12 0.0047 1.4 12.2 5.9 1 23 260 283 260 283 0.95 3 12 0.0063 1.9 11.8 0.4 2 23 486 508 485 508 0.96 4 12 0.032 9.7 9.6 0.4 6 23 517 534 517 534 0.98 5 12 0.00059 0.18 15.0 1.3 1 22 540 561 540 563 0.90 6 12 7.5e-06 0.0023 21.0 2.3 1 23 571 594 571 594 0.96 7 12 0.074 23 8.4 0.3 1 23 600 623 600 623 0.92 8 12 0.0027 0.83 12.9 0.4 2 23 626 647 625 647 0.97 9 12 0.17 51 7.3 0.2 2 23 656 677 655 677 0.96 10 12 0.027 8.2 9.8 2.8 2 23 685 707 684 707 0.92 11 12 1.8e-05 0.0054 19.8 1.2 1 23 713 735 713 735 0.98 12 12 0.064 20 8.6 9.3 1 23 741 764 741 764 0.98
Sequence Information
- Coding Sequence
- atggtatGCAGATTGTGTTTGCAAAACAGTTCTGAAGTACTTGATATATATAATAACAAAGGACAAGAGTTAAAAATAGCTATGGTGATTGGTAAACATTTTTGGTTCGAGccaaaaaatgaTGATCCCGTCTCGTCACACATATGCCACAGTTGTTGGACAAAGCTATCTGACTTCCACGATTTTTACAAATATGTCGAAAAGGCGCAGCAACTTTTGTCAGTAGAAGTTATAGTTAAAACCGAGTACAAAATAACAGTCTGTGATATAACAGTTGAGGACGTAGAATTAGCAAGTAAACATGAACTTGAGGAAAATACAGAAGAACAATATGAAGAGCCGTTTAATATAACATCTGATGTGTTAGCAGAGGACAATTATGGTGTAATGAAATATGAGTTTCCGCCTGATTTGAAAGACCAATCTATTGATATTGTAATTAATGAGAAAAAGAAAGATGATCAAGATATAACTGCAATACATGTTGGCAAAGGAGATGAAAGCGATTTGCAGTTCCTAGTTAAtcataaaaaggaaattttaaggTATAAAGGCACGGAACTTAAAAGACCCTCTGAACGGaataaagtagattttcttaccGAAGAAGCAATAACAACATATAAAGGGCGTGGACGTCCATGTAAAGGTGAAGTGGCTCCTTTGAAAAATAATCAACAATCTGATGGCAAATACATATGTTATATTTGCAAGAAATCGTATAAATTGGCACATTCACTAAAAGCACATATGTTACAACACACGGGTCTCTCTTTGCACCCTTGTCCCCACTGCAGTCGTACGTTCAACTATATCAGCACTATGCGTAGACATCGTAAACAGAAGCATCCAAAGGAATTTGAAGAATTTCGAATGCCAATAAAAATAAGTTCTCGCAGGAAAGAGATTATAATACCAACAACATCATCTTCATCAGATGCTACCAAGAACTCTGGTGAATTATCAAGTAAACATGTACTTGAGGAAAATATAGAACCGTTTAATATAACATCTGATGTGTTGGCAGAAGACAATTATGGTGTAATAGAATTTGAATTTCTGCCTGATTTGGAAGACCAATCTATTGGTATTGTAAATaatgagaaaaagaaaaatgatcaAGATATATTTGCAATACATGCTGACAAAGAAGATGAAAGCGATTTGCAGTtccaaataaaagacaaaaagaaaattgtgatGAAAAAAGGCACAAAACTCAAAAGCTCCTCTGAACGGAAAAAAGCAAAAGCTCCTACCGAAAATGCAACAACAACATACGAAGGATGTAGACGACCACATAAAGGTGAAATGGCTTCGTTGAAAAATGAGTCAAATTGTAATGAAGAAAAAGCTGCAAAACTCAGAATTCACAATGATGCAAGTGGATCTAATATTACGACACAGGAAATGTCAGAAATTATCAACCGTAAAATTTCTGAATATATGCAACTGAAATGTGATGTTTGTGGTATCGAGTTGGATACTTTTGGTCATATAAGAAATCATATGAGGTCGCTTCATGATGTTCGTCCATATGTCAAATGTTGTGAAAAGAAATTTACCAGGCGTGCGTGGTTATATGATCACATAAAGTTTCATTTAAACCCCGATATATATAAATGTGAAAAATGTTATAAAGTTTTTGCGGACAAACGTGCTTTTACAAATCATAATGTTTCTATGCATCAGTCTGAAGATACTAAAATATATCAATGTCCCCAGTGTCCTAAAAAGTTTGCTAGAAAGTATTTACTACAGACTCATAAAACTCGGCGGCATTATAaagtattgaaatatttttgttcagAATGTAAAAGAGGATATCCTTTTATGTCCGCTTTGGCGTCTCACACGGCTTTGAGGCATGGAACAAAGTGTGATATCTGTTCGGAAGTAGTTAAAGGGCAAGTCGCTTTTAAACGACATCAGCAAAAACACCAACGTATTGTTGAACCAAAAGTGCAATGTGATCTCTGTGGTTCATGGTATAAAGACAAATTAAGTCTAGCCAGACATAAAAGATGGCATAGGTATCAAGAACAACCACAAGTTTGTAATGTTTGTCAAAAAACCTATCCTAGTCGTACGGCATTGTCCAGCCATAAACATCATGTTCACCAACCTAATGGCAAATACGTatgtaatatttgcaaaaaatcttataaaatggCAAAGTCACTTAAAGAGCATATGTCAAACCACACGGGAGTCTCTTTGTACCGTTGTCTACACTGCAGTCGAACGTTCAACCACATGAGCAATATGCATTTACATCGTAAAAGGATGCATCCAAAGGAATTTGAAGAACTTCGAAAGCTAAGAAAAGTAATGCCAACGATATCATCTTTATCAGATGCTACAAACAACTCTTGTGAATTTGTTCCATTTTCGAGTAGTGTATTAGCACTAATAAAAGAGAAACAAGAACATGCTAAATATGATTTAGATACTTTACGatag
- Protein Sequence
- MVCRLCLQNSSEVLDIYNNKGQELKIAMVIGKHFWFEPKNDDPVSSHICHSCWTKLSDFHDFYKYVEKAQQLLSVEVIVKTEYKITVCDITVEDVELASKHELEENTEEQYEEPFNITSDVLAEDNYGVMKYEFPPDLKDQSIDIVINEKKKDDQDITAIHVGKGDESDLQFLVNHKKEILRYKGTELKRPSERNKVDFLTEEAITTYKGRGRPCKGEVAPLKNNQQSDGKYICYICKKSYKLAHSLKAHMLQHTGLSLHPCPHCSRTFNYISTMRRHRKQKHPKEFEEFRMPIKISSRRKEIIIPTTSSSSDATKNSGELSSKHVLEENIEPFNITSDVLAEDNYGVIEFEFLPDLEDQSIGIVNNEKKKNDQDIFAIHADKEDESDLQFQIKDKKKIVMKKGTKLKSSSERKKAKAPTENATTTYEGCRRPHKGEMASLKNESNCNEEKAAKLRIHNDASGSNITTQEMSEIINRKISEYMQLKCDVCGIELDTFGHIRNHMRSLHDVRPYVKCCEKKFTRRAWLYDHIKFHLNPDIYKCEKCYKVFADKRAFTNHNVSMHQSEDTKIYQCPQCPKKFARKYLLQTHKTRRHYKVLKYFCSECKRGYPFMSALASHTALRHGTKCDICSEVVKGQVAFKRHQQKHQRIVEPKVQCDLCGSWYKDKLSLARHKRWHRYQEQPQVCNVCQKTYPSRTALSSHKHHVHQPNGKYVCNICKKSYKMAKSLKEHMSNHTGVSLYRCLHCSRTFNHMSNMHLHRKRMHPKEFEELRKLRKVMPTISSLSDATNNSCEFVPFSSSVLALIKEKQEHAKYDLDTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -