Basic Information

Insect: Cordilura impudica
Gene Symbol: -
Assembly: GCA_963682025.1
Location: OY821520.1:200776449-200779234[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.019 5.8 10.3 1.7 1 23 337 360 337 360 0.93

2 7 0.00029 0.09 16.0 0.2 1 23 364 386 364 386 0.99

3 7 3e-05 0.0093 19.1 6.4 1 23 392 414 392 414 0.98

4 7 2.2e-06 0.00069 22.6 1.1 1 23 420 442 420 442 0.98

5 7 4.1e-05 0.012 18.7 0.1 1 23 448 470 448 470 0.97

6 7 2.7e-05 0.0082 19.2 3.3 1 23 475 498 475 498 0.98

7 7 0.00072 0.22 14.8 6.6 1 23 504 526 504 526 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.019	5.8	10.3	1.7	1	23	337	360	337	360	0.93
2	7	0.00029	0.09	16.0	0.2	1	23	364	386	364	386	0.99
3	7	3e-05	0.0093	19.1	6.4	1	23	392	414	392	414	0.98
4	7	2.2e-06	0.00069	22.6	1.1	1	23	420	442	420	442	0.98
5	7	4.1e-05	0.012	18.7	0.1	1	23	448	470	448	470	0.97
6	7	2.7e-05	0.0082	19.2	3.3	1	23	475	498	475	498	0.98
7	7	0.00072	0.22	14.8	6.6	1	23	504	526	504	526	0.98

Sequence Information

Coding Sequence: ATGTCAATTTCTAATCCAGACGTAGTTAATAGCTGCCGTGTGTGTCGCAGTCCAAATCAAGATGGCAATTATCAatgtttatttcaaaataaagacGAGGGGCTAAATCTTCTTAGTGAAGCTGGAACACTATATGAAAACTTGTTTAGACTTTCCATAGATTTAAATTATCACTACTATCCACAATTTTTGTGTAATAGTTGCGATTTACAAATGAAACTGTTTAAAAAACTCAAGGATAAGGCACTAAAAACTTTAGAGTATTTAAAAGATGTATATAGAGAAGAAATAGTATATGAAACTGAAACTGATATTATATATCAGGTTTTGGAAGTAATAGATTATAGAAACGAAAAAGGCCAAGACGCTCTTGGAAATACAAGAGAACGAGAAGAACAGCCAGCTGAAATTATTACAAAAGAAGGGCAACATGAAAAGGAGCATCAGAATGAGGAAGTTATGCAAACATTTAAAGCAGAGGAAATCTTGGAAATTTTACCTTCAGAAGAAAAAGAAGCTGATAGCCAAAACCAGGATGTTTTGCAAACTTTTGATGACGAGAAAAACTTGGAAAGTTTAACTTTACATCATCATGAATCGCGACCACAAATTGACTTTATCCGTTTTGAAAATAACTATGAAGAAGTTGAAGCATTTGAGAACAACGTCGATACTTCTTCAACAACAGATTTCTTTCAAATTCAGCTGGATTCACAAGACACATGTGAAATAGAAAAATCTGATTATGTTACAGAAATTTATGAACTTATGGATGATAATTCTATAACACAATACTCAGAAACCTCGGAACATTTAAATGAAGTTGATGATTTTGAAATTACTAAGGCAGAATCCAGTACAGCTTACAGTGATATAGAGTACGTGGAATCAATTTATATGGAAAGTGAAAATGATGTTAAAATTCCAGAATTAAATACGCCAAGAAAAAGGATAAGAAATAGCTCAAAaccaaataatacaataataggaACAACCAGGAGGAGAGAATACAAATGTGGACCATGCAAGCAAGAATTTAGGACGTCACAAGAATATAAAAAACACAGAACCCTTGTACATGATCAAAAATATCCCTGCAGCATCTGTTCAAAATTACTTAAGTCTGAGCCGGCTTTATTCACTCATATGCGAACGCACAATAGCCCGAATCCTTTCCAATGTGAACTGTGCCAAAAGACCTTCAATCAAAAAGTTCACCTACAATATCATATGAATCACCACAATAATGTACGTAACTTCAAATGTGATGTATGCGATAAGGCCTTCATAACAAAAACTGATCTTAATGTGCACAAACGTTTTCACACTGGCCACCGGCCTTATGTTTGTGATATTTGTGGTAAAAGCTACATTATGATGGAACATTTAAAAGCCCACGCCTTAATACATACCGAACAAGTTTTCGAATGTGAAGTGTGTCAACGAAGGTTTTCCACGCACAAAACGCTAAGGCAACATGTAAAAACTATACATGCCGAAGAACCgcaatttaagtgtaatatatgTTTGAGGCCATTCCGGAGAAAACATCATTTAGaaTACCATTCGAGGCAACACCAAAAGGGTATAGATCTTCTGGACAAACCCTATAAACTTGCAGATGAACATGAATTAGATAATGAAGCAGATTGTGGAGTTTCAGATGACATGGAATATGTTGATGATCCTGGTTATGTGGCACTTAGTGATGATATGTTGATGTGa
Protein Sequence: MSISNPDVVNSCRVCRSPNQDGNYQCLFQNKDEGLNLLSEAGTLYENLFRLSIDLNYHYYPQFLCNSCDLQMKLFKKLKDKALKTLEYLKDVYREEIVYETETDIIYQVLEVIDYRNEKGQDALGNTREREEQPAEIITKEGQHEKEHQNEEVMQTFKAEEILEILPSEEKEADSQNQDVLQTFDDEKNLESLTLHHHESRPQIDFIRFENNYEEVEAFENNVDTSSTTDFFQIQLDSQDTCEIEKSDYVTEIYELMDDNSITQYSETSEHLNEVDDFEITKAESSTAYSDIEYVESIYMESENDVKIPELNTPRKRIRNSSKPNNTIIGTTRRREYKCGPCKQEFRTSQEYKKHRTLVHDQKYPCSICSKLLKSEPALFTHMRTHNSPNPFQCELCQKTFNQKVHLQYHMNHHNNVRNFKCDVCDKAFITKTDLNVHKRFHTGHRPYVCDICGKSYIMMEHLKAHALIHTEQVFECEVCQRRFSTHKTLRQHVKTIHAEEPQFKCNICLRPFRRKHHLEYHSRQHQKGIDLLDKPYKLADEHELDNEADCGVSDDMEYVDDPGYVALSDDMLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00371551;
90% Identity: iTF_00371551;
80% Identity: iTF_00371553;