Cimp084342.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- grau
- Assembly
- GCA_963682025.1
- Location
- OY821520.1:135103253-135105106[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.046 14 9.1 1.5 2 23 277 299 276 299 0.95 2 10 0.1 31 8.0 0.4 6 23 308 325 308 325 0.99 3 10 0.00012 0.037 17.2 0.7 1 23 331 353 331 353 0.97 4 10 2e-05 0.006 19.7 1.8 1 23 364 386 364 386 0.97 5 10 0.00073 0.22 14.7 0.7 1 23 394 417 394 417 0.93 6 10 0.0014 0.43 13.8 0.3 3 23 425 445 424 445 0.96 7 10 0.00035 0.11 15.7 0.2 2 23 454 476 453 476 0.96 8 10 0.48 1.5e+02 5.9 1.5 3 23 486 507 484 507 0.88 9 10 8.9e-06 0.0027 20.7 4.6 1 23 513 535 513 535 0.96 10 10 3.4e-05 0.01 18.9 4.0 1 23 541 564 541 564 0.96
Sequence Information
- Coding Sequence
- atgaataattgcgTTGTTTGTTTGGATTCCAATGCCGATATATTTTCACGCATTGGCATTGACACGAGTGAATGGAAAGAATTCAATATACAACGCATCATAGAGAAACATTTGTGGTGGTGGTATATGAAAAAACCCAGCAACTATTCGGTGCAGTGGATTTGTCGTCAATGCTGGCAGGAGGTATCATCGTTtcataacttttatataaaagttgaAAATGAGCATAATCAATTTAAGATGAAAATGTTGCCTGCTTTAAATAATGATACTGATAACGAACTTTTGATAGTAAAGCAGGAATGCAAAGTTTTTGACAGCGGATATACACTAACAGAAGACACGCTGATGCCCTTGGAGAAACGTCGAAGAGGTAGAAAAAAGAAAACACCGGAAAACATAAAAGAAATACACATTGAAGAACTTCCTGCTGCCGTAGtcgtaaaaaatgaaaattttactcaaaatttGGATGAGACCAATATAGAATATGGGGATGTAGAACCAAGTGCCGATTATGAAACTAACGATGTTATGAAGACTTCAGAGTCTGTGGATGATATTTGGGAACCTGATATTCATATTAATAATACTGATGGTGAAGATGAAAATGCTTTTGAAGGATTACAAGATGATGTTAACTCCAATAATGTTTCCTTCAAAGAAACTGCAGCACGCCAACGTAAGCCAAAAACTAAAAGGGTTGTtactaaaaggaaaaataaagttGAGAAGAAGAAAAAGCCGGATTcgaaaaatgaaatttgtaaaaaaactGAAGTCTCAAAGAAAAATGATGAGTTTTTAGCTGAAAATCAATTTGAGCTTACGTGCAGTCTTTGTAAGGTTCCACTTATAAATTTTTCGCAACTAAAATCACACTACCGTCATGAACACGATATTCTCGGCCATGTCATGTGTTGTAATAGAAAGTTCTTTAAACGAGGTCTACTTGTTGACCACTTACGAGTCCACAAAGATCCGAACTATTTCAAGTGTCCCCATTGTGATAGGATTCTAGCTAATCGAGTGAATTACGAAAACCATATTGAATATCACAAAGAATCCAAAGAGCCACGAGAGCTAACGTTTAGTTGTGACAAATGCGAAAAGTCATTCTTTAAAAAAGCCAGTTTGGAACGCCATCAATTGTTACACGTACCTGAAGATAAAAAACAGTTTCAATGCAATGAATGTGACAAAAAATTTGCCACAGGGTATCTACGCAAACAACACATAGCACTTACTCACTCTTACAAATATGCGAAAATCTGTGACATTTGTGGCAAATTGTTACGggataaattttcatttatacgtCATATGGATGAACATAATGGAGCTACACCAGCCAAGGTACCCTGCGATATATGTGGCGTAGAATTGAcgaacaaatatttattaaatcgtCACAAGAAAAAATTGCATACCGAAGCCAATTTACAAGAACAGATCTGTCCATATTGTTCAAAAGTATCGCCTAATTTAAGTGCACACCGCCATCATGTAAATTACTCTCATACTTTGGAACGTAAACATGCGTGTCATATgtgtgataaaaaatttaaacgtcCCAAAGAACTGAGGGAACACTTAAGTACTCACACCGGTGAGGCATTATACACTTGTCCTCATTGCCCGCGAACATTTATTTCCAATGGAAATATGCACAAGCATCGAAAACTATCACATCGCAAGGAATGGGAAGAAGGCAGATTGAAGAAATTAACTGCACAACAGCTGAAACCATTGAAAAATCAAGACAGCTTGAGTTCCACTTATACGCATCGCGCAGCAACGTTACAACAGAGTTATCCAGAGAATTTAACAATGGCAAATGTATTGaacttttaa
- Protein Sequence
- MNNCVVCLDSNADIFSRIGIDTSEWKEFNIQRIIEKHLWWWYMKKPSNYSVQWICRQCWQEVSSFHNFYIKVENEHNQFKMKMLPALNNDTDNELLIVKQECKVFDSGYTLTEDTLMPLEKRRRGRKKKTPENIKEIHIEELPAAVVVKNENFTQNLDETNIEYGDVEPSADYETNDVMKTSESVDDIWEPDIHINNTDGEDENAFEGLQDDVNSNNVSFKETAARQRKPKTKRVVTKRKNKVEKKKKPDSKNEICKKTEVSKKNDEFLAENQFELTCSLCKVPLINFSQLKSHYRHEHDILGHVMCCNRKFFKRGLLVDHLRVHKDPNYFKCPHCDRILANRVNYENHIEYHKESKEPRELTFSCDKCEKSFFKKASLERHQLLHVPEDKKQFQCNECDKKFATGYLRKQHIALTHSYKYAKICDICGKLLRDKFSFIRHMDEHNGATPAKVPCDICGVELTNKYLLNRHKKKLHTEANLQEQICPYCSKVSPNLSAHRHHVNYSHTLERKHACHMCDKKFKRPKELREHLSTHTGEALYTCPHCPRTFISNGNMHKHRKLSHRKEWEEGRLKKLTAQQLKPLKNQDSLSSTYTHRAATLQQSYPENLTMANVLNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -