Cimp075761.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821519.1:250110209-250116656[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.4 7.4e+02 3.7 0.1 3 23 148 169 146 169 0.88 2 10 0.2 63 7.0 0.5 2 23 230 252 229 253 0.94 3 10 0.001 0.31 14.3 0.6 1 23 434 456 434 456 0.98 4 10 1.4e-05 0.0042 20.2 4.0 1 23 462 484 462 484 0.99 5 10 9.7e-05 0.03 17.5 2.5 1 23 490 512 490 512 0.98 6 10 0.0004 0.12 15.5 3.0 1 23 520 542 520 542 0.99 7 10 0.00078 0.24 14.6 1.1 1 23 548 571 548 571 0.94 8 10 0.0023 0.7 13.2 4.0 1 23 627 649 627 649 0.98 9 10 3e-06 0.00092 22.2 2.3 1 23 657 679 657 679 0.98 10 10 3.4e-05 0.011 18.9 2.0 1 23 685 708 685 708 0.96
Sequence Information
- Coding Sequence
- ATGTTGGAGCATGTTcccattaaaattgaaaatgaagttaTAGAGAATGGAGCAGAAAATACTATAAAATCTAATATTGAACAACAAATACAAGATCATAAAGTATTAACTACTGAAAACGAAGATCTTTTGGTAATTGAAGAGATATCTTCTATGAGGATTGGCGAGTTTGAAGTGATCGAATTAGAGGCTACTAAATATGTAGAGACATCAACAAACTCAAAATcctacaaaaataataatttagagAATAAAAAGCTGTGTCTGGGAAATAACGATGATTCTGAGAAtgaaataaattgtaaaaatgtaTCAATATCTCGTACACAAAGTAATGAATTCACTTGTAGCAAACTCTCTATTGTTTGCTCCGATAAAGCAGACACTACATCATGTGGTAACATCTGTGTCCTTTACCAGCAACAGAAACTTATCATTAATTGTATGTTTTGTGATTTAAATTATGGCGATATAGGAAATTTTAAAAGCCATTTAGGCGAAGACCACAAAATGTTTCACTTGGAAGAAGATGTAGCACAAAAAAACTCGCCTCGTATTTTGCGTAAACGAATCGGAAGTCGAAAAGAACTAAATCACGAATTAAAGTTAGAACATTTAGAAGGCGAAGTTCACACATCAGAATCTTTTGGCAATGTTTTTATATCGCATCAACAAGAATTGCTAATGGTGTGCAGTAGTTGTGACACTGAATATGCCGGTTTggatttgtttgaaaaacatCTTCAACAACAACATCATGTCTTTGAACGATCCCGGATTAAGTCGGATACATCTACAGAAACAGTAAACACGGCAGAGAACTATGAATCAGATAGCGAAACAATGAATCTTAAGGATTCCATAAAAGTAGATAAGGAGACAATTACAGACAATATTCCAGCTAAACCCAGTAAAAGATCTGTGACAAAACGTAAATGTACCACTAAGGACAATCAAAGTCAACAAGAAGATTTAGAAAGAACAGAAACTAAATTAGAACCAGATCTATTGCAAACCGTAGCTCAAAAAACACCAAcactaataaataaaagaagTCGTAGAACAATAAAGTCCTCAATGGAACTAGAAGAGCCAATTTCTGAAGATCCATCTGATGAAGATCAAATAAACGAAGAAAATACACAAGacgaaaaatatcttttaaaaccactTTATGAAGAGCAAATttccaatagtatttcagaaacaGATGAAAAACGTTTAAATGAATTTGATGAAAAAATCCTTAAACTTAAAAAGTTAAAAGAACTTAAAGAACGATGTAATAaagagaagaaatataaatgtacATTATGTGAGTTGGCATATTTCAATAAAGAGGATCTAAGTGAGCATATGAGTCAGCACTCTACTGATCGTCGCTACAAATGTTCTTATTGCTCCAAAGGATTTAAACGTAATTGTGATTTAATGACTCACGTACGAGTTCATACTGGCGAGAAACCATTTGTCTGTGAAATATGCAATACATGTTTCAGAGCTAAACAAAATCTTTTGGTACACAGAAAGTCCCACATGGGTGAAGCTTCCAAAACGTACGAGTGTGAACACTGTGATAAGAAATTCCTACGCAATATCGATCGTAAAGTTCATATGAGAACCCATACCGGTGAAAAACCTTTTAGATGTGAAATATGCAATCGTGGTTATTCCTCGAAATTCAATGTTAAAGCTCATTTCGACAGAGATCATATTTCCGGTAATGGTCGCAAGAAAAAAAAAGGACCAAATCCTCAGGCCCTAAAAGAAGAATTAGATAAACAAAAGAAACTGCTAGAAGAACTAAAACCAAGTAAAACCGACGAAAAGATTATAACCACAGAATTTAAATCTCCAATTCCTGAGGAAGACAAACCATTTGTATGTGATACATGTAACAAACGTTTCCGGGCTAACCACTATCTTTTGTTACACAAAAAGTCTCACACGGCTGAAGCTTCTAAAACGTTCGAATGTGAACAATGTGATAAGAAATTTATACGTAATAGCGATCGTAAAACTCATATGAGATCTCATACCGGTGACAAGCCATACAAATGTGAAATATGTGATCGAGGTTTTTGCTCGAAATTCAATATGAAAGCTCATGTCGAAAGAGATCATATTTCCGGTAATAGGCGTTGGAAACCTGGTCCACAACTTAAggctttaaaaaaagatatagatAAACATAAGAAACTGATAGAAGAACTACAACAACAGCTGCGACAACGAAATAAAACCGATGAAAGGATTATACCTACAGAAGAACTTCCCACACAGGAATCTTTGTAA
- Protein Sequence
- MLEHVPIKIENEVIENGAENTIKSNIEQQIQDHKVLTTENEDLLVIEEISSMRIGEFEVIELEATKYVETSTNSKSYKNNNLENKKLCLGNNDDSENEINCKNVSISRTQSNEFTCSKLSIVCSDKADTTSCGNICVLYQQQKLIINCMFCDLNYGDIGNFKSHLGEDHKMFHLEEDVAQKNSPRILRKRIGSRKELNHELKLEHLEGEVHTSESFGNVFISHQQELLMVCSSCDTEYAGLDLFEKHLQQQHHVFERSRIKSDTSTETVNTAENYESDSETMNLKDSIKVDKETITDNIPAKPSKRSVTKRKCTTKDNQSQQEDLERTETKLEPDLLQTVAQKTPTLINKRSRRTIKSSMELEEPISEDPSDEDQINEENTQDEKYLLKPLYEEQISNSISETDEKRLNEFDEKILKLKKLKELKERCNKEKKYKCTLCELAYFNKEDLSEHMSQHSTDRRYKCSYCSKGFKRNCDLMTHVRVHTGEKPFVCEICNTCFRAKQNLLVHRKSHMGEASKTYECEHCDKKFLRNIDRKVHMRTHTGEKPFRCEICNRGYSSKFNVKAHFDRDHISGNGRKKKKGPNPQALKEELDKQKKLLEELKPSKTDEKIITTEFKSPIPEEDKPFVCDTCNKRFRANHYLLLHKKSHTAEASKTFECEQCDKKFIRNSDRKTHMRSHTGDKPYKCEICDRGFCSKFNMKAHVERDHISGNRRWKPGPQLKALKKDIDKHKKLIEELQQQLRQRNKTDERIIPTEELPTQESL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -