Cimp080636.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cordilura impudica
Gene Symbol
-
Assembly
GCA_963682025.1
Location
OY821520.1:78636481-78638143[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.0016 0.48 13.7 0.5 2 23 229 251 228 251 0.94
2 10 6.6 2e+03 2.3 3.5 6 23 260 277 254 277 0.95
3 10 4.8e-06 0.0015 21.6 0.6 1 23 283 306 283 306 0.97
4 10 0.00029 0.089 16.0 3.6 2 23 313 334 312 334 0.97
5 10 0.00015 0.045 16.9 0.0 1 23 341 363 341 363 0.95
6 10 0.037 11 9.3 0.2 2 23 368 389 368 389 0.93
7 10 0.0016 0.48 13.7 0.2 1 23 397 420 397 420 0.91
8 10 0.0005 0.15 15.2 0.3 1 23 427 450 427 450 0.96
9 10 1.8e-05 0.0054 19.8 0.7 1 23 456 478 456 478 0.99
10 10 0.0001 0.031 17.4 6.8 1 23 484 507 484 507 0.98

Sequence Information

Coding Sequence
atggcTACTAAATTAtgttctttgtgtttttcacaATCCTGTGAATATACATTGCTGCAAAGTGAATTAGGTGAAAGTACTAAAACCTATGAAATAACTGTAACATATTTTGATCCCATGTTACTTACAGGGGAGGAGAATTCACAACTTGTAaatgaaaataaagttttatgcCTGGAGTGTTGGTGTTACATAGAAGATTTCTATGAATTTCAGCAAACGGTATTAACGTCGCGTTCCCTGTTGGAAAAGAACCGGTTATGTACATTGAAAGTCACACCCAAAGAAGAATTAACCACATTATGCTCGAAAGATAAGCAAACTTTTAAGGATATAGATGGAGACATATTACTTGatgatttattattaatttacggGAACGAGGATGAACAACTATTAACAGAATCAATTACATCTGAAGCAATTAATAGTACAGAAGAGAATGATACTTATATTAAAATCAATCTCAAACAAGAAGAAACATCACAATGTGGAAAatcaaaaagattttttaaacagAACACAGTAACAGAAAGTACTGACAGTGATGAAAATGAATTCTcgaataagaaaacaaaaaaatgcgtATCCCCAGAAATACCGAAGAAAATAGCAAGAATAACTTATTGTAGAGAGATATGCAAAGAATCTGATTATTTCATTTCGCAATGGAAAGCTCAATTGGAATGTGATTTGTGCCAGGAATCGTACGCCAATTTTGAATCATTGAGAAAACATTTTAGAGAAACacacaaaataaaatgttatattaaatgTTGTGAACGAAAATTTTTTCATCGGTACGTTCTGGtagaacatataaaaaatcatattaatcCAGCGATTCATAAATGCGATATATGTGATAAAATCTTCGCTAACAACTCTAATGTTGAATTACACAAGAGAGTAATCCATGAACCCAGTAAAGAACTTGAGTGCAATGTTTGCCATAACTTCTTTAAACTTAAATCCACTTTGAAGCGTCATTTACTTACTCATGCTAGAGCCGATAAAGATTTCATTTGTCCAGAATGTGGTAAGGGATTTGCTTCGGAATTACTGCTAAAATTACATATTGACGGCCATAATGTTGATCGTGTTTGTGATCAATGTGGTAAAACTATTCGTGGCTTCGCCGccttcaaaaaacatttagtggaGCATGATGGAATTGGAGCACCTAAATTCCCTTGCGATGTATGTGGTGCACAGCTTAAGACCAATACAAATCTAAAAAATCATAAGGCTGCATATCATAATGATGGAACCACTCTTTACGTATGTAGCATATGTGGTAAAGTTGCTGCCCATAAACAAGCCTTATTGTCGCATAAAAAGCTTGTTCACGAAGACAAACGTAAATATAAATGTGGCTTCTGTGAAAAGGCATTTAAGCGATCCAAAGTTCTACGAGAGCATATAGCAACACATACCGGGCAGGATTTATATCAGTGTGCCCATTGTCCACAAACCTTTAAAGTAAGCTCCAATTTGCATCATCATCGTAAGAAGGTACATCCCAAAGAATGGGAAGAGGCTAGAAGGGGTCGTTTACAAATACCTAAGGTAAATATGAAAGAAGTAACAAATCAAGTGATATTATGA
Protein Sequence
MATKLCSLCFSQSCEYTLLQSELGESTKTYEITVTYFDPMLLTGEENSQLVNENKVLCLECWCYIEDFYEFQQTVLTSRSLLEKNRLCTLKVTPKEELTTLCSKDKQTFKDIDGDILLDDLLLIYGNEDEQLLTESITSEAINSTEENDTYIKINLKQEETSQCGKSKRFFKQNTVTESTDSDENEFSNKKTKKCVSPEIPKKIARITYCREICKESDYFISQWKAQLECDLCQESYANFESLRKHFRETHKIKCYIKCCERKFFHRYVLVEHIKNHINPAIHKCDICDKIFANNSNVELHKRVIHEPSKELECNVCHNFFKLKSTLKRHLLTHARADKDFICPECGKGFASELLLKLHIDGHNVDRVCDQCGKTIRGFAAFKKHLVEHDGIGAPKFPCDVCGAQLKTNTNLKNHKAAYHNDGTTLYVCSICGKVAAHKQALLSHKKLVHEDKRKYKCGFCEKAFKRSKVLREHIATHTGQDLYQCAHCPQTFKVSSNLHHHRKKVHPKEWEEARRGRLQIPKVNMKEVTNQVIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-