Cimp081877.3
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821520.1:99657499-99661388[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.026 7.8 9.9 0.9 2 23 140 162 139 162 0.95 2 18 2.4 7.5e+02 3.6 0.9 9 23 207 222 206 222 0.93 3 18 3.1e-06 0.00094 22.2 0.2 1 23 230 253 230 253 0.95 4 18 0.00041 0.13 15.5 1.9 3 23 263 284 261 284 0.91 5 18 9.9 3e+03 1.7 0.9 2 23 451 473 450 473 0.90 6 18 4.4e-05 0.013 18.6 0.8 1 23 506 529 506 529 0.96 7 18 2.9 8.8e+02 3.4 2.2 3 23 606 627 604 627 0.91 8 18 8.5 2.6e+03 1.9 0.5 6 23 637 654 637 654 0.95 9 18 0.0081 2.5 11.4 0.4 1 23 660 683 660 683 0.98 10 18 0.0053 1.6 12.0 1.0 3 23 765 786 763 786 0.91 11 18 0.085 26 8.2 4.9 1 23 821 844 821 844 0.92 12 18 8e-05 0.025 17.7 0.7 1 23 852 875 852 875 0.96 13 18 9.3e-05 0.029 17.5 3.5 2 23 884 906 883 906 0.96 14 18 0.038 12 9.3 0.5 2 23 1027 1049 1026 1049 0.90 15 18 0.0028 0.86 12.9 0.2 1 20 1082 1101 1082 1103 0.94 16 18 0.18 54 7.2 0.3 3 19 1164 1180 1162 1182 0.94 17 18 0.00014 0.043 17.0 0.4 1 23 1218 1241 1218 1241 0.97 18 18 3e-05 0.0091 19.1 0.5 2 23 1248 1270 1247 1270 0.94
Sequence Information
- Coding Sequence
- ATGCCTCCAACATTATGCTGTTTATGTATATCTACCTGTAATacatttaaatgtctgtataatGACGATGGTGAATTAAATGAAGTATATCATATGGCAATCAAATACTTTGATACGACGTTTTTACGACCAGGAAAATATTCTGTTATATGTACAGAATGTTGTCAACATATTACAGATTTCCATACATTTCAACAAACGGTTATTAATACACAATCCCAACTGGAATATATTGAACCAATTGTACAACTTACCAAATTGGAGCATCAGTTGATAGTTGATAAAAATGGAAGCGAAGAAACAAGTCTGATGCCACAAATCTATAAAATTCTTCCAAAAGAGACAAGAGCAAGTTTTAATTATGACAGTGTAAGACTGAAAAATGACGCTTTTATAGCAAAATGCAAGGGAATGTTGGAATGCGTGGTGTGTCATGAAATATTTGAAACATATTCTTTATTAGGTAATCATTTTCGTAGAAAACATCCCGAAAATGAATGTTATATATACTGctgtaaacttaaatttaataaaagacaaaaacTTGTGAAACATATTCACCAATATCACAATCGAACCGAAAAACATGGAGCATATGAATTTGAATTGAGTATAGAGTCATTTTCACAAAATCCATTTCTTAACCGGCATTATCGCCATGTCCATAAACATACAGATCGGCACAGCTACAAATGTGATATATGTGGAAGACCATTTGCACAAGCTTTtagcttaaaaaaacacattattttaaAGCATAAGGAAAATGCAGCGCCACAATGGTTTTGTCAACTATGTaatcgaaaatttaaatttcagtccAACTTGGAAAAACATAAGGAACAAATTCATTCAAATGCTGTAGCGCAGATTCCTATGATTAAAATTGAACCATCCGAAGAAGGAACTAATTCAATGGTTTCTAATCATATTGATAAAATTGTTGATTTTATATTAGTTGAACCCTTAGAAAATGAAATATCGGCAAAGGTTGAATTAAAAACTTTCACAACAAATGAACAAAAATCGAAAGAAGAACAATTTGGTGATGAAATTCATGTAaaaagatttgaagatacattagGAAATGATAATCAAATAACAGATATCACAGAACCGGATCAATTTCTGTTAAGTTATGTATACCCACAAAATGAAATACAAATGCCACCTTTAGATATTGTTGATATTAAAGAAGAACTTTCATTAGAACATGACAATGACTCAAATAATGAAACATCTGAGCACAACAATGCCtcattgaatataaaaataagaaattctaaATTACATagacaaaaaaaagaaattgagtATGATGCTTTTATAGCTAAACACATAGGCGACCTAGAATGTCCTTTGTGCAAGGAATTGCATGAAAACTACTCCTTGCTCAGACAACATTTCCGCGATGAACACACTGGCGAAAATTGTTACATAACTTGTTGCCAACTTAAACTTAACAGTCGTTTTCGTTTATTTGAACATCTTCAATTTCATATCGACCCAAAGGCGTATCAATGTGATGTGTGtggtaaatgttttaaaaacagtGCTTCAGTAGTACTGCATAAGCAAATTGTGCATATTGATAAACAATCGTCAAATCATTACTATTTATGTCGCTGCAAAACATCCAAAGAACTTTATgctaaatatgaaaatgaaacaaCTACACCAACCAAAGAAGAAGGGCGCGAAAATGTATCTCGAGACTTTGTAAATCAGAAATACTATAGCCTGGTCTGTTGTCAACTAAAACGAAGAATGTTACGGAATGATGCTACCATAGCTAAATGGAATAGTGAGTTGTTTTGTAGGCTTTGTGGTGCGAAATTTTCTTGGTACTCCTTGTTGCGTGATCACTTCTGCAGCAATCATCCACAAGAGAACTTTTACATCAATTGCTGTCAACTAAACTTTTATAAGATTGTACATTTCTTAGAGCATATACGTATTCACTTGCCGCCCAATAATTTCAAATGTGAAATATGCAACATATATTTTCTGGGAAAGTACAGTTTAGTGAATCATATGAGTACAGCTCATAAAGACTTACCATCTATTGCATCGACTTCAACGGAAACCAAATTAAATAGCCAACCAACAACTGGTAGTGATGACACGACATTAGATCGGATACCGACTAAATCGACTGGAATGGAGGAAGACATTATTGGCAAACAAAATGAATGTAATGACATTTCTATGGAGCTTTCTGAAAACAATAGCAATACCGAAAAATATAGAAGATTTGATGCTTATATCGCAAAATGGAAGGGGCACTTGGATTGTGttatatgtaaaacaaaatttgccAATTACAGTTTGTTAAAAAGACATTTTTCGAACAACCATCTTGACCAAGAAGTTCATATTGTTTGCTGCAACCGTAGAATAACTAAGAGATTTAAAATAGTTGAACACATTCGTAAATATCACAATCatgtaaaaaatttacataaatgcaaaatgTGTAGTGCATCATTTCCAcattatataaaattaagaagACATTATTTTCAGGTGCATAATCCCAGagataaatatgaatttaaatgTGAAACATGTGGAGCAGCATTTAAGCAAATAAGAAGCTTAAGAAAACACATTCTTAACAGGCACTCGGAAAAAAGTTTATCACTATGGATTTGTCAAGAGTGCCACCGTTCCTTTAAAATGAAAACCAGTTTGGAAAACCATATGAAAAAGTTCCATTCAGATGTAATATTAAAATCAACGCTAAACGGAAGTACACCAGAAGAACAAGaaacaactaaaattaaaataaaaaaggaatcatTTAATAATGACATAAGTCACGAATTTGAAgaccaaaaatttataatttcccaAGAAATTCCTTCTGGTTCTATGGCGACTAGTGATGAAATTCATTTGCAAGCTTTAGATATTATTGAGATAAAATCAGAAATGTCCCTCACAGATAACAGTGAATTGGATAATGAAAAAATAGGTGATATGGAAGCTGACTTACGAGTCATTACCTCTAATCGAAATAAACATTCGAATCCGATTTTATATGATGATTTCATATCGAAATGGAAAGGTGATTTAGAATGTCCCGAATGTAAggcaatttttgtaaaatactccTTATTAAATGAACACTTTCATTTGAATCATCCCAAAGAACGATGTTATataatttgttgcaatatctttattattaatattgatgCTATAGTTGAACATATTGGAACTCATATAGATTCCAAGTTTTATCAGTGTAATGTATGTGGTAGGAGCTACAACGAAGCTCAAAGCTTAGGTCGGCATAAGAGTAGAGTACAGACCGACCGAAGAAGTACGGATCGTCGGTGTTTATGTCATTGCAGTAAGGCCATGGAACTTTGTGCAAAAAAGAACTCCATTAACATCACAGCTTCAACATCCAGTCTGACTACacgtaaacaaaaaatgttggaGAATGATGAAATTATAGCGAAATGGTATCCACAATTAGACTGTAGGATATGTAAAGAGAAATTTATGTATTATTCGTTACTACGTGCACATTTCTACTGTAAACATCCGCAGGAAACATGTTACATAATATGTTGCAAACGAAATTTCTATAAGACAAATGATGCTCTCGACCACATTCGCATCCATTTGGATCCATATGCTTTCAAGTGTGATCTATGCAATATACCATTGTCTGCCAAAAGTAGTTTAAAAAGACATATGCGCGAAATGCACGGCGAAGCAAATATCTGGAATTGTGATAAATGTGGTAAAGCTTACAAGCGTCTGAAAAATCTAACAGATCATATAACATCCGAACATGCCAATCTAAAAAGTTacacttga
- Protein Sequence
- MPPTLCCLCISTCNTFKCLYNDDGELNEVYHMAIKYFDTTFLRPGKYSVICTECCQHITDFHTFQQTVINTQSQLEYIEPIVQLTKLEHQLIVDKNGSEETSLMPQIYKILPKETRASFNYDSVRLKNDAFIAKCKGMLECVVCHEIFETYSLLGNHFRRKHPENECYIYCCKLKFNKRQKLVKHIHQYHNRTEKHGAYEFELSIESFSQNPFLNRHYRHVHKHTDRHSYKCDICGRPFAQAFSLKKHIILKHKENAAPQWFCQLCNRKFKFQSNLEKHKEQIHSNAVAQIPMIKIEPSEEGTNSMVSNHIDKIVDFILVEPLENEISAKVELKTFTTNEQKSKEEQFGDEIHVKRFEDTLGNDNQITDITEPDQFLLSYVYPQNEIQMPPLDIVDIKEELSLEHDNDSNNETSEHNNASLNIKIRNSKLHRQKKEIEYDAFIAKHIGDLECPLCKELHENYSLLRQHFRDEHTGENCYITCCQLKLNSRFRLFEHLQFHIDPKAYQCDVCGKCFKNSASVVLHKQIVHIDKQSSNHYYLCRCKTSKELYAKYENETTTPTKEEGRENVSRDFVNQKYYSLVCCQLKRRMLRNDATIAKWNSELFCRLCGAKFSWYSLLRDHFCSNHPQENFYINCCQLNFYKIVHFLEHIRIHLPPNNFKCEICNIYFLGKYSLVNHMSTAHKDLPSIASTSTETKLNSQPTTGSDDTTLDRIPTKSTGMEEDIIGKQNECNDISMELSENNSNTEKYRRFDAYIAKWKGHLDCVICKTKFANYSLLKRHFSNNHLDQEVHIVCCNRRITKRFKIVEHIRKYHNHVKNLHKCKMCSASFPHYIKLRRHYFQVHNPRDKYEFKCETCGAAFKQIRSLRKHILNRHSEKSLSLWICQECHRSFKMKTSLENHMKKFHSDVILKSTLNGSTPEEQETTKIKIKKESFNNDISHEFEDQKFIISQEIPSGSMATSDEIHLQALDIIEIKSEMSLTDNSELDNEKIGDMEADLRVITSNRNKHSNPILYDDFISKWKGDLECPECKAIFVKYSLLNEHFHLNHPKERCYIICCNIFIINIDAIVEHIGTHIDSKFYQCNVCGRSYNEAQSLGRHKSRVQTDRRSTDRRCLCHCSKAMELCAKKNSINITASTSSLTTRKQKMLENDEIIAKWYPQLDCRICKEKFMYYSLLRAHFYCKHPQETCYIICCKRNFYKTNDALDHIRIHLDPYAFKCDLCNIPLSAKSSLKRHMREMHGEANIWNCDKCGKAYKRLKNLTDHITSEHANLKSYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -