Basic Information

Insect: Cordilura impudica
Gene Symbol: grau
Assembly: GCA_963682025.1
Location: OY821521.1:56053420-56055427[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.2 9.9e+02 3.3 0.2 3 23 293 314 291 314 0.92

2 9 1.1e-06 0.00032 23.7 1.3 1 23 346 368 346 368 0.99

3 9 1e-05 0.0032 20.5 1.7 1 23 377 399 377 399 0.98

4 9 5e-06 0.0015 21.5 1.9 1 23 407 430 407 431 0.95

5 9 0.51 1.6e+02 5.8 3.0 3 23 438 458 437 458 0.96

6 9 0.0016 0.5 13.6 0.3 2 23 467 489 466 489 0.95

7 9 0.00017 0.053 16.7 0.9 1 23 497 520 497 520 0.96

8 9 2.6e-07 8e-05 25.6 0.9 1 23 526 548 526 548 0.98

9 9 0.00012 0.037 17.2 2.7 1 23 554 577 554 577 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.2	9.9e+02	3.3	0.2	3	23	293	314	291	314	0.92
2	9	1.1e-06	0.00032	23.7	1.3	1	23	346	368	346	368	0.99
3	9	1e-05	0.0032	20.5	1.7	1	23	377	399	377	399	0.98
4	9	5e-06	0.0015	21.5	1.9	1	23	407	430	407	431	0.95
5	9	0.51	1.6e+02	5.8	3.0	3	23	438	458	437	458	0.96
6	9	0.0016	0.5	13.6	0.3	2	23	467	489	466	489	0.95
7	9	0.00017	0.053	16.7	0.9	1	23	497	520	497	520	0.96
8	9	2.6e-07	8e-05	25.6	0.9	1	23	526	548	526	548	0.98
9	9	0.00012	0.037	17.2	2.7	1	23	554	577	554	577	0.95

Sequence Information

Coding Sequence: atggaaaattgtttaCTATGCCTAGAGATAAATAAAGAATTTGTCGAAAATATAAAAGTTGATTCAATACTATGGCaggaacaaaatataaaaaaaataatcgaaaaacatTTTTGGGCATTGgaAACGATACTTCCTTCTGCATGGATGTGTAAAATATGTTGGCAagaattgtatgtttttcataaattCTATATGCGAATAGAAGAGGCACATGTAAATTTGGGAACTGTAATGAAAACTGAAAGTGAATTGCATCTAACTAATCAGACACCTCATTTTGAAAACAATGAACATAAAAACCAGTTGGATGGCAAAGATTTATTTTACACAGAAGCTTTAGTAGAAAGTCATCTGGAACCAGAAATTTTAATGGAACACCCTATATCTACAGAATTCCTGGTTGAAGATCCAGAAGGCTTTTCAAAACAAGAACATGAGGATGACCTATGCTCAGATGATATACCTTTAAAACAGCGACGAAAACGAGGGCGTCCACCTAAAGATATAAAAAGTGgaataaaatataccaaaaaagaccctcttaaaaagacaaaaaaatgcAGAAAGCTCAAAATATCCAGTACAAAGTCTAAGAATACAAATCAAATTACATCAAATACAAATACTTCAAGTTTGTTGTTAACTGAAACACTTAAACAATCTCTAATAAAAGATGATCCGGATGCTTTAAATAACTCAAAAGGAACCGACATTTCTAATGATTCTCATCATGATAATGATGATTTCGATACAGATTCTGATTACCAAGATAACAAAAAACCAAGAGAAACTAcacacaaaaaacgaaaaaatcctGATGAGCAAACTCGTAAGGAACACGATAAAATTATAGCGGAACACTTTCAAATATTCTGTAGTCTGTGTCAAATAGCTATGGAAAACTTTATTGCTTTGCGTAAACATTTCAGAGTGGAACATAATAAACGTGGATTCGTTATATGCTGTAAGAGAAAAATATTTACTCGTCCTGTTTTAGTAGATCACATTCACTTTCATTTGGATCCTGATTATTTTAAATGCAAGCAGTGTGGTAAAGTCTTATCAGAACGAAGTACATTGGAAAGTCACATGAAAACTCACGTGGACGGTCAACAAGAAAGAAAACATACTTGTGATCTATGTGGCAAGTCTTTTAAGGAAAATGCTACATTAGAAAATCATAAATTAACGCATTCAGCAGATTATGAGAAAAAGTATTCGTGTACAGAATGTGGTAAATTttttaccaCTTTATACAGTTTGAATTATCACATACAAGCTATACATCACAATAAGTTTGTAAAAATCTGTGATATATGTGGTAAAACAATGCGTTGTCGCAATTCATTCAAACTACATATggaaaaacatgaaaataaacATGGTACACCCATAACATGTGACATTTGTGGTCTTCGTTTAGTTGATAGAAGAGGATTAAGACGTCATAAAAATTCACAACATCCTGTGGGAGGTAAAAAAGAATATTCATGTCACATATGCTCGAAGGTATCCCCAAATTTGAGAGCTCTTAGAACTCATATACGTTTTGCTCATGAAGTCGGCTATGATCACAAATGTACTTTGTGTGATAAAGCCTTTAAAAGACCAGAAGCACTGAAGGAACATATGGCTACACATACTGGTACAGCTTTACATGCGTGTCCCTGGTGtccaaaaacttttatttctaaTGGCAACATGCATAATCATCGAAAGAAATCACATCCTATGGAATGGGAAGAGGCACAGCGTCAAAAATATTCCGGAAACTTACCAGCTAACTACAAACCTCCTGTAGTAACAAGAATAAACAACTTATTGTAA
Protein Sequence: MENCLLCLEINKEFVENIKVDSILWQEQNIKKIIEKHFWALETILPSAWMCKICWQELYVFHKFYMRIEEAHVNLGTVMKTESELHLTNQTPHFENNEHKNQLDGKDLFYTEALVESHLEPEILMEHPISTEFLVEDPEGFSKQEHEDDLCSDDIPLKQRRKRGRPPKDIKSGIKYTKKDPLKKTKKCRKLKISSTKSKNTNQITSNTNTSSLLLTETLKQSLIKDDPDALNNSKGTDISNDSHHDNDDFDTDSDYQDNKKPRETTHKKRKNPDEQTRKEHDKIIAEHFQIFCSLCQIAMENFIALRKHFRVEHNKRGFVICCKRKIFTRPVLVDHIHFHLDPDYFKCKQCGKVLSERSTLESHMKTHVDGQQERKHTCDLCGKSFKENATLENHKLTHSADYEKKYSCTECGKFFTTLYSLNYHIQAIHHNKFVKICDICGKTMRCRNSFKLHMEKHENKHGTPITCDICGLRLVDRRGLRRHKNSQHPVGGKKEYSCHICSKVSPNLRALRTHIRFAHEVGYDHKCTLCDKAFKRPEALKEHMATHTGTALHACPWCPKTFISNGNMHNHRKKSHPMEWEEAQRQKYSGNLPANYKPPVVTRINNLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -