Basic Information

Insect: Cordilura impudica
Gene Symbol: -
Assembly: GCA_963682025.1
Location: OY821517.1:270430547-270433422[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 8.8e-06 0.0027 20.8 0.1 2 23 208 230 207 230 0.96

2 11 0.012 3.6 10.9 3.8 1 23 251 274 251 274 0.94

3 11 1.6 4.8e+02 4.2 2.0 2 23 295 317 294 317 0.95

4 11 4.1 1.3e+03 2.9 3.7 1 23 324 347 324 347 0.95

5 11 0.0048 1.5 12.2 2.0 2 23 472 494 472 494 0.97

6 11 8.9e-07 0.00027 23.9 2.0 3 23 503 524 502 524 0.97

7 11 0.068 21 8.5 3.8 1 23 544 566 544 567 0.95

8 11 3.7e-05 0.011 18.8 0.6 1 23 573 595 573 595 0.96

9 11 5.8e-06 0.0018 21.3 2.0 1 23 601 623 601 623 0.99

10 11 7.1e-08 2.2e-05 27.3 5.4 1 23 629 651 629 651 0.99

11 11 0.0014 0.43 13.8 0.1 2 21 658 677 657 681 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	8.8e-06	0.0027	20.8	0.1	2	23	208	230	207	230	0.96
2	11	0.012	3.6	10.9	3.8	1	23	251	274	251	274	0.94
3	11	1.6	4.8e+02	4.2	2.0	2	23	295	317	294	317	0.95
4	11	4.1	1.3e+03	2.9	3.7	1	23	324	347	324	347	0.95
5	11	0.0048	1.5	12.2	2.0	2	23	472	494	472	494	0.97
6	11	8.9e-07	0.00027	23.9	2.0	3	23	503	524	502	524	0.97
7	11	0.068	21	8.5	3.8	1	23	544	566	544	567	0.95
8	11	3.7e-05	0.011	18.8	0.6	1	23	573	595	573	595	0.96
9	11	5.8e-06	0.0018	21.3	2.0	1	23	601	623	601	623	0.99
10	11	7.1e-08	2.2e-05	27.3	5.4	1	23	629	651	629	651	0.99
11	11	0.0014	0.43	13.8	0.1	2	21	658	677	657	681	0.89

Sequence Information

Coding Sequence: ATGGAAGATACTACAATTCATAAATGTAGAACATGTCTTAAAAATAATGCACGAACATTTCCTCTTTCAAAACAAGCTATAGGTGGCAGTCCTAGAAAAACATATGCCCATCTACTAAAAGAATTCGCGAAACTGGagtttaatctCGAACAAGAACGTAATTTGCCACAATATTTATGTTCTTTATGTTGCCGCCAATTACGGAACATATATGCATTTGTTAAGCAGGCACAATATTGTAATAATAAACTCGTAAAAGTTTTAACCAAACAACTGGATTGCCTACGGGAACAAACCATTGATTTCCCTGCTATTGAATTAGATAAATCATTAAATGTTAAGCTAGAAAAATATGGTGGATTTGATGATGAGAGTCTACGTGAAACAATGAGGGAtgcaattaatataaaaaatgaagaaaatgcaaccaataatatatttttgaaagatgAACTAATGGAGGATATTCCTGCTAATGCTTTTAGGAAAATAAATGACGCAGTTGGTGAATTAAAGAAtaataaaattCAATCCCATGATATAACCGTGGAATGTTCTTCCATATCCGACATTATTTCTACCAAAGTTATAAGCAGTACAACAGAATCTGATCCAAAAGTTGTCTGCCCAATATGTAATAAACTTATAAGCAGACgtgataatttaataaaacatatgcGTGTGCAACATGACATAAAAGATCCAAGTACACTTTTggagaaacaaaaaccaggaccTAAGGAACAAATTTTCCCATGTCAAAAATGTCCTTGTAAATATTCCAATAAATATTCCTATCTTAATCATCTAATGGATAAACATGGTATAAATCAAAGAAAttctaataaaaatgaaaaaattaaggtaaaaaataaattaattagatgTCGATCATGTGATTACACAGCTAAGACTTATGCAGCTTTACACTATCACAACCGATCTAAGCATGGCACTGAAGATGATAAATTTAAATGTACATTTTGCTCATATATGTGTTTAAAAAAGTTTGATTTGTTGGTACATGTTAAAAATGTTCACAGACAAcagattaaaatattaaaagctGAAAAACAAACGGAATCTTCAAATAACTCTACGAACTTTCAAGATTTGTTTATAAAGgcgaatatgaaaaatgaagcaAAGCAATGtgaaattaatgaaaatcctacgAATGAGGAAAATTCCTTTATGAGTACTACGAATGAAATTACATGCAAAGAAAATTCCGATGATGACTCAAGTGATGATAACATTCCTTTAGCTCAAAAAGTAACAAAATCACAACAAATTGGTGCAAGCAAAGAATTTAATATGTATAAAGAATCCAGCGATGAGGAATttattagaaacattttaaatattaaaaaacggcaACCGAAATCTGCAACAACAAAATACTTAGCAAGAAAGTGTGAAGAATGtggtaatatttataaaaatcatcAGGCTTTATACGCTCATCAGCGTCACGTTCATATAACCGAAGATAAGTATAGTCTATGCCCACATTgtggtaaaaaatataaaagaaagtcTGACCTTAGAAACCATATTGAAAAAGCTCACAGTCCAAAAACTGAAACTGAAGTGGTTAGACCACCGCCTAAGGTGCGAGAAAAACGTTTTATGTGCACAGAATGTTCGTATGTATGCAGCACtataactattttaaaaattcacatgAATCGCCATCATACTGGCGAAAAGCCCTATAAATGTGATATTTGCTATAAATCGTTTATAGTACCATATGACTTAAAGGTTCATCGTTATTTACACACCGGCGAAAGACCCTATAAATGTCCCATTTGCTTAAAAGGATTTCGAGATAATTCTCATATGGTTAAACACAAACGAATTCACAGCGGTGAACGTCCATACAAGTGTAAGGATTGTGGTAAATGTTTTACCCAGTCGTATAATTTATCTGTACATAAACGAActcatttaaaggaaaaaaaactaaattgtcCGATTTGTGGTATATTATTCGAAAGCAAATCATTATTAAATATTCATCGTATAAATGAAAATCATCATGATGAAGCTGTATAA
Protein Sequence: MEDTTIHKCRTCLKNNARTFPLSKQAIGGSPRKTYAHLLKEFAKLEFNLEQERNLPQYLCSLCCRQLRNIYAFVKQAQYCNNKLVKVLTKQLDCLREQTIDFPAIELDKSLNVKLEKYGGFDDESLRETMRDAINIKNEENATNNIFLKDELMEDIPANAFRKINDAVGELKNNKIQSHDITVECSSISDIISTKVISSTTESDPKVVCPICNKLISRRDNLIKHMRVQHDIKDPSTLLEKQKPGPKEQIFPCQKCPCKYSNKYSYLNHLMDKHGINQRNSNKNEKIKVKNKLIRCRSCDYTAKTYAALHYHNRSKHGTEDDKFKCTFCSYMCLKKFDLLVHVKNVHRQQIKILKAEKQTESSNNSTNFQDLFIKANMKNEAKQCEINENPTNEENSFMSTTNEITCKENSDDDSSDDNIPLAQKVTKSQQIGASKEFNMYKESSDEEFIRNILNIKKRQPKSATTKYLARKCEECGNIYKNHQALYAHQRHVHITEDKYSLCPHCGKKYKRKSDLRNHIEKAHSPKTETEVVRPPPKVREKRFMCTECSYVCSTITILKIHMNRHHTGEKPYKCDICYKSFIVPYDLKVHRYLHTGERPYKCPICLKGFRDNSHMVKHKRIHSGERPYKCKDCGKCFTQSYNLSVHKRTHLKEKKLNCPICGILFESKSLLNIHRINENHHDEAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -