Cimp025431.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821517.1:270424146-270425809[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00014 0.043 17.0 2.1 2 23 254 276 253 276 0.95 2 8 5.1e-05 0.016 18.4 3.7 2 23 284 305 283 306 0.95 3 8 0.00031 0.094 15.9 0.5 1 23 325 348 325 348 0.97 4 8 2.3e-05 0.0071 19.4 0.6 1 23 367 389 367 389 0.96 5 8 1.4e-05 0.0043 20.1 1.7 1 23 395 417 395 417 0.98 6 8 2.6e-07 8.1e-05 25.6 1.5 1 23 423 445 423 445 0.99 7 8 4.8e-06 0.0015 21.6 3.6 1 23 451 473 451 473 0.99 8 8 0.0009 0.27 14.4 1.5 1 22 479 500 479 503 0.91
Sequence Information
- Coding Sequence
- atgaccaAAAATAGGAAGTTAAGAAATAATAAATGTCGTACATGTTTCAATGGTTCAAAAGGACTACAATTACTTTCAAAGATGGCAACGGAAGAAAAACCACAACCAAAATCCTACGGTGAACTGTTAAAAGAAATTACTAACATTAATataaTGGATAAAACATTTCATGAAATGCCCCAATCTATTTGTGCATGTTGTATACGTAAATTAAAATCTGCCCACGCATTTGTGCTACAATCCCAAGAAGTTCATGATAAACTATGGTCTATACTAAATGGCGACAACGCAAGCAAGGATATAGATTGCTTGCAAGAAGCCCAAATAGATATTCAAAATTGTCTAGAAATCAAAATAGAAGATGAGGAAGCAGAAATTGATAAACAAGTAGCACCACGATTTGAAGTTGAATTGAAAATTGAGGAACAAGAAGAAAGTCCTGCGGAATCGATGATAACAAAAAATGACGAAACTAAGGAAGTAATTCCTGTAAAAGACTTGCTAGAAGACAGCATTATAGAACCAGAAGACATGAAAATGTCTGACAGTGAATGTGATGAGGATGATGAAGATATTTTTGACTTTCcgaagcaaaatatgcaaatatcTGATAGTGAAGATGATTCTGTACCATCAAATGACTCTGATTGGAAAGACGAAGATTCAAAacctttaaaaagtaaaaaaaatacaacaaaaacaccctcaaaaagtaaaaaagcaaaaaaagaagCTAATATAGATGATTACTTACCAACACCATGTGATCAATGTGATAGAGTTTTTGCTAATTCTCGTCTATTATCGCGACATAAACGTCATACTCATGTACCAGaagaattaaaagtaaaatgtcCATATTGTCCTAATAAATTCGGCCGCCGTCATAATATGTATGCCCATATGAGAACTCATCATAAAGATCAGCCAATAGAAGAGCATATTACGCAACAAAGGAAATTCCCTCGACAATATGCGTGTGAACAATGTGAGGGATCTTATACCAATAAATATTACCTGTTAGCTCACATTAAGAGTAAACATAATCCCGATGGCGCGCCTAAAAAACCGGAAAGAGTAATATTACCTAAAAAACGCTTTTTATGTACTTTGTGTGGTTCAAAATTTGATACACAATCTAATTTAGACGTACATATTAGGCGACACACAGGGGAAAAACCTTATCCATGTGATCTATGCGATCGTTCCTTTTATAGACCATGTGATATGCAAGCACATCGTCGTTCCCATACAGGAGAAAAACCTTTTAAATGTAGAATATGTGAAAAGGCATTTGCAAgatcgaataaattaaaaattcatatgcGCACTCATTCCAATGAACGTCCCTACAAGTGCACTCAATGCGAAAAAGCTTTTAAGCATTCTAAAGATTTGAACATACATAAACGTATACATACCGGAGAAAGGCCATATCAATGTGCTGTATGTCAGAGTACATTTACTCAAAGCAATTctttaaaattacatcaaacaaaacaacaacattttGAAATAATTGATCAAGGAATAACATGTTAA
- Protein Sequence
- MTKNRKLRNNKCRTCFNGSKGLQLLSKMATEEKPQPKSYGELLKEITNINIMDKTFHEMPQSICACCIRKLKSAHAFVLQSQEVHDKLWSILNGDNASKDIDCLQEAQIDIQNCLEIKIEDEEAEIDKQVAPRFEVELKIEEQEESPAESMITKNDETKEVIPVKDLLEDSIIEPEDMKMSDSECDEDDEDIFDFPKQNMQISDSEDDSVPSNDSDWKDEDSKPLKSKKNTTKTPSKSKKAKKEANIDDYLPTPCDQCDRVFANSRLLSRHKRHTHVPEELKVKCPYCPNKFGRRHNMYAHMRTHHKDQPIEEHITQQRKFPRQYACEQCEGSYTNKYYLLAHIKSKHNPDGAPKKPERVILPKKRFLCTLCGSKFDTQSNLDVHIRRHTGEKPYPCDLCDRSFYRPCDMQAHRRSHTGEKPFKCRICEKAFARSNKLKIHMRTHSNERPYKCTQCEKAFKHSKDLNIHKRIHTGERPYQCAVCQSTFTQSNSLKLHQTKQQHFEIIDQGITC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -