Cimp097876.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cordilura impudica
Gene Symbol
grau
Assembly
GCA_963682025.1
Location
OY821521.1:55359801-55363182[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0078 2.4 11.5 6.7 1 23 277 300 277 300 0.96
2 16 0.017 5.3 10.4 0.9 1 20 308 327 308 330 0.92
3 16 0.024 7.4 9.9 0.5 1 23 338 363 338 363 0.92
4 16 0.1 32 8.0 3.0 3 23 371 391 370 391 0.97
5 16 0.03 9.1 9.7 0.1 2 23 400 423 399 423 0.96
6 16 0.0024 0.72 13.1 3.8 1 23 430 453 430 453 0.97
7 16 2.6e-06 0.0008 22.4 0.7 1 23 458 480 458 480 0.97
8 16 0.0002 0.062 16.5 4.0 1 23 486 509 486 509 0.98
9 16 0.12 37 7.8 0.3 2 23 525 547 524 547 0.94
10 16 0.00044 0.14 15.4 1.9 1 23 555 577 555 577 0.96
11 16 1.1 3.3e+02 4.7 0.2 1 23 585 610 585 610 0.93
12 16 0.068 21 8.5 0.6 3 23 617 637 616 637 0.97
13 16 0.33 1e+02 6.4 0.1 11 23 657 669 647 669 0.91
14 16 8.9e-05 0.027 17.6 3.8 1 23 680 703 680 703 0.96
15 16 5.1e-06 0.0016 21.5 0.7 1 23 708 730 708 730 0.97
16 16 0.00084 0.26 14.5 5.0 1 23 736 759 736 759 0.98

Sequence Information

Coding Sequence
atggtttgttgtgtgtgtttattagaaaaCCCAGATATTATGGGTGTCTTTGATGCTTTAGGTCAACAACTAAAAATTGCCCAAGtcatacataaacatttttggaTAAAGCCCCTGCCTAACGATTTACTTACATCGCAAATCTGCACTATATGCTGGCATAAAATTGATGACTTTAATTTATTCTACCAAACTGTGGAAAAGGCACATAAGGAATATCAACAAATCCATCATGATCAGGCCACTACCATCAAGGAAGAAGATGAACCCTGTTTCAGTACAATTAAGCTAGAGCAGGAGGAGGTCTTTGAGGGCAATCTAGTGCAAACAGAAGTAGAAACTGATTTTAACCTAGAAACCAAAAATCCCTTAGAAGAATATCATAGTATCGATGTATATGACGAAGAAACTGAAAATGACTGTGGGGCAACTTCAGATGAATATGTACCATCCGATATGAGTGAGCATGAATCATCAAACGAAGAAGAAACATTGcttgatataaaaacaaaaaatcgtgaAGATCTCGCCGCTAAGAAAATTGCAAAGCGCAGGACAAACACTGATAcagaagaaaataaagaaatttccAAGAAAAAAAGAACGTTTAATAGACTAGATCCTGTTTACACAGAGGAAATGATTAAAAAGCATATACCCATGGGCTGTAATTTATGTGTTTTTGTTGGCGGTAACTTTTCCGATATTGTGGAACACTTCAAAATTCACCACCCAAATGTGAGACCATACATTATGTGCTGTGATAAAAAATTAACCAAGCAATTTTATGTTGCTCAGCATGCCTTAAAACATGAAGATCCAAACTGTTTCAGgTGTCAAGAATGCAATAAATCATTTACAACTACTTGTGGCCTACATACACATAATTTAACCTATCATGCACCTGAAGATGAACGCATTCACTCTTGTGAATTATGTCCACAAAAATTCGCCAGACGAAATTTATTGGAACTTCATAAGCCCTCACACATACCTAGGGAACAATGGAAGTACTTTTGTAAAATATGTTCACCAGACAAAACATTTGCTAGtcaatatttgttaaatataCACAATAGTATGCAACATAaaagagagaagaaaaatatatgtCATGTATGTGCTAAAGAAATTAAAGTTAAACATTCATTTGAAAAACATGTGCGTTCACATTTTGAAGAGTGTGGGCCACGCGTTAAATGTCCTTATCCAGACTGTGACAGATGGTTGAAGGATGAAGATAGTTTGAAGCAACATTTGCAGAGACATAATTCCGAAGGAAAAACATTTAAATGTGAAGCATgtgataaaatatgtaaaaatcgtAGAGCCTTAACAAATCACAAGCGTTATAGTCATTCTAACGAGATATTCCAATGTGAACAATGTGATAAAGCATTTAAAAGAGCTATATCGTTAAGGGAACATATGACTCAACATACAGGTGAAACTTTATATAAATGCCCATTTTGTCCTAGAACCTTCAATTCCAATGCCAATATGCATTCTCATAAGAAGAAACAACATCCCATCGAATGGGAAGAATGGCGTCGAATTTTAAATCATAATATAAAgtgCGAACAGTGCATTAAATCATTTGCATCAATCCGTGGTCTGCGCGCTCACAGTTTAAAATATCATCCATTAGAAGAAGAATGTATACATGAATGTGAACAATGTCCAAAAAAATTTGCACGACGAAATTTACTCGAATTACATAAAACTTCACATATACCAAGAGAACAATGGAAGTTCTTTTGCAAACAATGTCCCCCTGGAAAAATttTTGCCAGTGATTTCTTATTAAATATACACACAAGTATGCAacataaaaaagagaaaaatatttgCCAGGTATGCGCTagggaaattaaaaataaaagatcctTCGAAAAACATGTACGCTTACATTTTGAAGATAGTGGTCCTCGCGTAAAATGCCTATATCCTAACTGCGAAAGTTGGCTGAAAGatgaagaaaatttgaaaatacaCATGCGAAGACATAATCGCGAAGATAATGCTgaggacaaaatatataaatgtccCGAATGTGATAAAGTATGTTCAAATAGTAACACATTAAAGTATCATAAACAATACAGTCATTCGAATAAGAGTTTCACATGTGATGTGTGTGACAAAACATTTAAGAGAGCTATAACTTTAAGGgaacatATAACACAACATACTGGTGAAACTCTTTATAAATGTCCCTTTTGCTCTAGAACATTCAATTCAAATGCTAATATGCATTCTCATAAGAAGAAACAACACCCTGTGGAATGGAAAGAATGGCGTATAAAGAAACGTGGCAGCGCTCAAGCTTTgattaattgttaa
Protein Sequence
MVCCVCLLENPDIMGVFDALGQQLKIAQVIHKHFWIKPLPNDLLTSQICTICWHKIDDFNLFYQTVEKAHKEYQQIHHDQATTIKEEDEPCFSTIKLEQEEVFEGNLVQTEVETDFNLETKNPLEEYHSIDVYDEETENDCGATSDEYVPSDMSEHESSNEEETLLDIKTKNREDLAAKKIAKRRTNTDTEENKEISKKKRTFNRLDPVYTEEMIKKHIPMGCNLCVFVGGNFSDIVEHFKIHHPNVRPYIMCCDKKLTKQFYVAQHALKHEDPNCFRCQECNKSFTTTCGLHTHNLTYHAPEDERIHSCELCPQKFARRNLLELHKPSHIPREQWKYFCKICSPDKTFASQYLLNIHNSMQHKREKKNICHVCAKEIKVKHSFEKHVRSHFEECGPRVKCPYPDCDRWLKDEDSLKQHLQRHNSEGKTFKCEACDKICKNRRALTNHKRYSHSNEIFQCEQCDKAFKRAISLREHMTQHTGETLYKCPFCPRTFNSNANMHSHKKKQHPIEWEEWRRILNHNIKCEQCIKSFASIRGLRAHSLKYHPLEEECIHECEQCPKKFARRNLLELHKTSHIPREQWKFFCKQCPPGKIFASDFLLNIHTSMQHKKEKNICQVCAREIKNKRSFEKHVRLHFEDSGPRVKCLYPNCESWLKDEENLKIHMRRHNREDNAEDKIYKCPECDKVCSNSNTLKYHKQYSHSNKSFTCDVCDKTFKRAITLREHITQHTGETLYKCPFCSRTFNSNANMHSHKKKQHPVEWKEWRIKKRGSAQALINC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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