Cimp030501.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821517.1:349802458-349804145[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.5e-06 0.00076 22.5 0.4 1 23 218 241 218 241 0.97 2 8 3.6 1.1e+03 3.1 1.2 1 20 247 266 247 267 0.86 3 8 0.00054 0.16 15.1 0.2 2 23 301 322 301 322 0.98 4 8 2.1e-05 0.0064 19.6 2.5 1 23 328 350 328 350 0.98 5 8 9.4e-07 0.00029 23.8 0.8 1 23 356 378 356 378 0.98 6 8 5.8e-07 0.00018 24.5 2.8 1 23 384 406 384 406 0.98 7 8 6.7e-07 0.0002 24.3 1.9 1 23 412 434 412 434 0.97 8 8 1e-05 0.0031 20.6 2.3 1 23 440 462 440 462 0.98
Sequence Information
- Coding Sequence
- atgtttaatattacCGAATTAACCTGTCGAGTTTGtttaaaagaacaaaatataatgataaatatttatgATGAATTAGAGGAACTACAAACAAATCTTAGGAATTTGTTAGAAACATGTGGAGACCTCCATATAGATGAAAATGATATATTTCCAAAACTATTATGTGAGGAATGCACCAGAGAGTTATTGATATCTTCAGAATTTCGAGAAAAGTGTTGTAAGTCCAAAGAGATCTTAAGTGAAATAATGCAACAGAATAATGATGCCGAAATTAAAGAATCCCAACGcataaatgaattaattcaatattCAATAGAAGATTTAAATAACCTAATAGAAGATACAGATGTCATTATTAAAGAAAACCATACAACTGAAGAGTTACATCAACACTCTGCAGAAGAGTCGTGGGAAATGCCCGACGATACTCAGACTTCAATAACAAATGAAATAGAAGTACCTTTGGTATCGGAAATCTCTTACAATGAAGATGCAAAAAATGATTTCTTTTCAGAAATTGATATTAAAGATTCAACAATAACCGTAGTAGATTCCGAACAGTTATCTTTGGAAACAACTGTTGAAAATGTAAATGTGGAACCTGAATGCTTCAGAACTGTAGATGATACAATAAGTAAAGACCTTTTATTTAATTGTGATGTCTGTGGTGCCACCTTTAAACAGGCTATAAATctacaaaaacatttacaaaggACGCATGCTCCTTTAACACTATTTACCTGTGAAAAATGTGATCATTGGTTTTCGCTCGAAATAGAATTCTATAAACATACACAATGTTGTAATTTATCTAAAACATCTGAATATAATATAGAAGGCCATAAAAGGAAAAAATCGTATAAAATGATTACGAAAAATATCAATCCAGATAATCGCAAATGTGTTTATTGCGAACGAGAATTTCCCACTCCATTTGCGGTACGTATGCATTTAAGAACTCACACTGGCGAAAGACCTTATCAATGTAAATATtgcataaaatcatttaaaacacaGTCCGCTTTAAATGTGCACAGTAAGAGGCATACTGGCCAAGCTGATTTTGTATGCACCGTCTGcaacaaaacattttttgagCAAGGTAATCTCTCGGTCCACATGCGATCTCATACTGGCGAACGTCCTCATGTCTGTACGGTGTGCAATAAAACGTTTACCCGTGTTTATTTGTTGCAACTTCATATGCGTACACATACTGGAGAAAAGCCATATAATTGCACTTATTGCGATAAAAGTTTTAGACAAAGTACAGATTTGCGTAGCCATTTGACCATTCATACCGGCTACAAACAATATTCTTGCCCTTTGTGTTCTAAGGCTTATATAAAACGTTCCCATTTGATGCAACACATGAGCAAACATTCAGTTCTTAACTCGGATGGGGAAACTGTGGAAACAATACAATATAAACAATCGGCCGTAGAAATAACTGATGCTTCCACGAATATAAAGGTACAAGATCCTGaaattttatatagttttgaTGATATTATAGAAAGTGAAGATGTAGTATTACAATCAGAAGATGTTggttaa
- Protein Sequence
- MFNITELTCRVCLKEQNIMINIYDELEELQTNLRNLLETCGDLHIDENDIFPKLLCEECTRELLISSEFREKCCKSKEILSEIMQQNNDAEIKESQRINELIQYSIEDLNNLIEDTDVIIKENHTTEELHQHSAEESWEMPDDTQTSITNEIEVPLVSEISYNEDAKNDFFSEIDIKDSTITVVDSEQLSLETTVENVNVEPECFRTVDDTISKDLLFNCDVCGATFKQAINLQKHLQRTHAPLTLFTCEKCDHWFSLEIEFYKHTQCCNLSKTSEYNIEGHKRKKSYKMITKNINPDNRKCVYCEREFPTPFAVRMHLRTHTGERPYQCKYCIKSFKTQSALNVHSKRHTGQADFVCTVCNKTFFEQGNLSVHMRSHTGERPHVCTVCNKTFTRVYLLQLHMRTHTGEKPYNCTYCDKSFRQSTDLRSHLTIHTGYKQYSCPLCSKAYIKRSHLMQHMSKHSVLNSDGETVETIQYKQSAVEITDASTNIKVQDPEILYSFDDIIESEDVVLQSEDVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -