Cimp014848.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821517.1:178838671-178841070[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.02 6.1 10.2 0.1 1 23 216 239 216 239 0.94 2 12 1.2 3.7e+02 4.6 0.8 1 23 404 426 404 426 0.93 3 12 0.00027 0.082 16.1 2.8 2 23 429 450 429 450 0.97 4 12 1.3e-05 0.004 20.2 0.2 3 23 458 478 456 478 0.98 5 12 2.6e-06 0.00081 22.4 5.8 2 23 485 506 484 506 0.97 6 12 2.9 8.8e+02 3.4 0.1 5 23 519 537 517 537 0.96 7 12 0.013 4 10.8 0.1 2 23 576 596 575 596 0.96 8 12 0.00011 0.035 17.3 0.4 1 19 602 620 602 624 0.95 9 12 1.8e-06 0.00055 22.9 1.8 1 23 632 654 632 654 0.99 10 12 6.3e-05 0.019 18.1 6.5 1 23 660 682 660 683 0.96 11 12 0.00038 0.12 15.6 6.4 1 23 688 710 688 710 0.99 12 12 0.00096 0.29 14.4 6.0 1 23 716 738 716 739 0.96
Sequence Information
- Coding Sequence
- ATGTATGGTGATATATCAGCCCGCTTCTTTAAGACTACATTTCCTGGTATATTTCCACAAGATAATGGCTGGAACCATGATGATTATTTTACTGTACAGGACTTGAGTGCATCAACTACTGCTCAAGCAACGAATGCCAACAATAGAATGAAGAGTTTCGAGGAACGTCTTCCGTTGGATGCCAATAATACCGGAACGGGAAATAATAGCAACAATGGTGGACTgccaatattttcacaaaattcaaatgataatTGTAATATTGATGTTATGCCCTCAACATCGTCTAAAATACGTAAAAGACGTAAACGCAATTCACAAGATGGTAAGACAACGCAGGCCAGTGGAAAACGTATGCAACCAACATCAACGATTACTTCGCAACAGATGATGATGCAACATCAAAATGAAATACACGGTGTCGATTTTAATTTcccacaacaacaccaacaacaacaacaacaacatcaacaacaggaACAAGCCCAACAACAGCAAGCCAGTACATCGGCAGAATTTTTGGCTGGACCATCAAATGCCGGTAGTACTGCGGCATCGTCATCGTTTATGAtgcatcatcagcaacaacaacaaaatcagcagcagcagcaacaaccgGTACAACAAAAACAACGTACAAAAGTTTACGAATGTGGCATCTGCAATGCTAAATATTCGAAACTGAAAGATCGTAATGCACACATGATCGATATTCATAATTATATACGACAAAATCGTAGATTAGTATGTCCCACCACTGGTCTTGCTACTCCTCTCACAAATGCCGATATGCAAGATGTTGCTATGCCAACGACCAGTGCAGCCAGCAGCATGTTAATGCCTCCCCTACAAAATGCCGACTGTTTGGTTGACTATAAACAGGGCATAGTAAAAATTGAACATGATAATATCCAACGAGATCCTGCTGGCCTAGAATCCCCCATTAGTGCAAATTTAAGTGCTAAAACTGAAGTTATGGaagatgataaaaaaaatctatcacTAGTACCGATGAAAGCAGACGATCCTTCCTCTAACATTAATTATATCGACACAAAACCGCCAACCAACAGTTTGCCATTGGCCCTGACAACACCAACTAGTAAATTGACGACACTCTATCGTATGCTGGTATCATTTAATATGACCACCCTCAAAGAACACCAATGTCTGTCTGAAATCGACGAGAATCTTATAAAATCTTCGATATTCTTTTGTTATGTATGTCGAGAAAATTTCAATTCGGTTAAAATGTACGATGCCCATTTGACGGAGCATCCAGCTGAGTGTTTTACGTGtggcaaaaaattccaaagatGGAAAAATTTCTCATTACATTTGAAACGACATTTGGGTTGGAAGGAATTCGGTTGTACGGTATGTGATAAGAAATTTGTAGTTCGCAGTGCATTAGTAGAACACATGCGTATGCACTCGGGCCTATCACCATTAAAATGTAAAGTTTGTGGTAAACACTTTAAACGCTATTCAAACCTAACACAACATCGCAAGAGACATACAAAGCAAACAATACGCAGAAAAGAATACGTTTGTTACTGTGGCGAAGTATTACCATCGAAAGCCCGTTTCCTATGGCATAAAGAAACCCACGATTCGAAACCAAAATGCTGTCCTCACTGTTGTGATCGTTTCGTACATGTTAACTCGCTGCGAAGACACATACGTCTGGCACATTCGGACAAATTCAATTATAACGAACCCATGGAATGTCCcatttgtaaacaaatttttgcaaaagCCTCAATGAAAGCACACATGGCCACACATTCCACAGAAACTCAATATGATTGTGCTATTTGTAGGAAATCATTTTCAACCAAATGGAATTTGAAAATTCATTCATGGGTGCATGCCAATCGTACATCTAAGCCCTTCAAATGTGAACACTGCCCCAAGGCATTTGTGCGTGAAGTTGATTTTAAGAATCACATGAATTCCCACAAACAAATCAAACCGTATACATGCGAAGTGTGTGGCTGTAAATTCATACGCAAATACAATTATATGCGCCATCGGCGAGAACATCatggtaataaaaaatataccTGCGATTTGTGTAAAAAATCGTTCCATCGTCACTACTATCTTATCGAGCACAGGCGCATACACACCGGTGAACGACCTTTTCAATGTACAATTTGCGGTAAAAGTTCAACCACGAAAACCAAtcataataaacatttaaaaatacatcATTCGCGCGATCCATTTACAGTGGAAGTGTAA
- Protein Sequence
- MYGDISARFFKTTFPGIFPQDNGWNHDDYFTVQDLSASTTAQATNANNRMKSFEERLPLDANNTGTGNNSNNGGLPIFSQNSNDNCNIDVMPSTSSKIRKRRKRNSQDGKTTQASGKRMQPTSTITSQQMMMQHQNEIHGVDFNFPQQHQQQQQQHQQQEQAQQQQASTSAEFLAGPSNAGSTAASSSFMMHHQQQQQNQQQQQQPVQQKQRTKVYECGICNAKYSKLKDRNAHMIDIHNYIRQNRRLVCPTTGLATPLTNADMQDVAMPTTSAASSMLMPPLQNADCLVDYKQGIVKIEHDNIQRDPAGLESPISANLSAKTEVMEDDKKNLSLVPMKADDPSSNINYIDTKPPTNSLPLALTTPTSKLTTLYRMLVSFNMTTLKEHQCLSEIDENLIKSSIFFCYVCRENFNSVKMYDAHLTEHPAECFTCGKKFQRWKNFSLHLKRHLGWKEFGCTVCDKKFVVRSALVEHMRMHSGLSPLKCKVCGKHFKRYSNLTQHRKRHTKQTIRRKEYVCYCGEVLPSKARFLWHKETHDSKPKCCPHCCDRFVHVNSLRRHIRLAHSDKFNYNEPMECPICKQIFAKASMKAHMATHSTETQYDCAICRKSFSTKWNLKIHSWVHANRTSKPFKCEHCPKAFVREVDFKNHMNSHKQIKPYTCEVCGCKFIRKYNYMRHRREHHGNKKYTCDLCKKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -